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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
6
candidate regulatory elements
5
chromatin state
4
target gene predictions
2
accessible chromatin
2
binding sites
1
variant allelic effects
Annotation Category
4
Target gene links
2
cis-regulatory elements
Annotation type Category
5
DNase-seq
2
ChIP-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
HiC
Available data
6
bed bed3+
1
bigWig
File set status
6
released
Genome assembly (visualization)
6
hg19
1
GRCh38
Organism
6
Homo sapiens
Biosample type
6
primary cell
Biosample term
55
HeLa-S3
40
H1-hESC
26
retina
25
heart
24
K562
24
kidney
24
stomach
21
endothelial cell
21
monocyte
20
A549
20
pericyte cell
20
pigmented layer of retina
19
CD14-positive monocyte
19
HFFc6
18
B cell
18
adrenal gland
18
brain
18
fibroblast
18
small intestine
17
lung
17
muscle of arm
16
macrophage
16
muscle of leg
16
placenta
15
large intestine
15
neural progenitor cell
15
thymus
14
common myeloid progenitor, CD34-positive
14
smooth muscle cell
13
excitatory neuron
13
left lung
13
liver
13
muscle of back
12
adipocyte
12
astrocyte
12
hepatocyte
12
right lung
11
hematopoietic multipotent progenitor cell
11
pancreatic beta cell
11
pancreatic ductal cell
11
renal pelvis
11
right kidney
10
CD8-positive, alpha-beta T cell
10
T cell
10
adipose tissue
10
heart left ventricle
10
pancreas
10
pancreatic acinar cell
10
pancreatic alpha cell
10
pituitary stalk
10
renal cortex interstitium
10
retinal pigment epithelial cell
10
spinal cord
10
spleen
9
CD4-positive, alpha-beta memory T cell
9
EndoC_BH1
9
GM12878
9
left kidney
9
natural killer cell
9
pancreatic delta cell
9
psoas muscle
9
regulatory T cell
8
H9
8
fibroblast of cardiac tissue
8
glutamatergic neuron
8
islet of Langerhans
8
sigmoid colon
8
trophoblast cell
7
CD8-positive, alpha-beta memory T cell
7
MCF-7
7
colon epithelial cell
7
embryonic stem cell
7
erythroblast
7
keratinocyte
7
lymphocyte
7
osteoblast
7
ovary
6
SGBS preadipocytes
6
T-helper 1 cell
6
coronary artery
6
dendritic cell
6
endothelial cell of hepatic sinusoid
6
endothelial cell of umbilical vein
6
gastrocnemius medialis
6
heart right ventricle
6
mammary gland epithelial cell
6
memory B cell
6
mesenchymal stem cell
6
mononuclear cell
6
olfactory receptor cell
6
skeletal muscle satellite cell
6
skin fibroblast
6
thyroid gland
6
tibial nerve
6
transverse colon
6
type II pneumocyte
5
HUES8
5
HepG2
5
T-helper 17 cell
5
T-helper 2 cell
5
body of pancreas
5
caudate nucleus
5
chondrocyte
5
cortical cell of adrenal gland
5
foreskin keratinocyte
5
gabaergic neuron
5
inhibitory neuron
5
luminal epithelial cell of mammary gland
5
muscle of trunk
5
naive B cell
5
naive thymus-derived CD8-positive, alpha-beta T cell
5
pancreatic stellate cell
5
right atrium auricular region
5
skeletal muscle fiber
5
skeletal muscle myoblast
5
tibial artery
4
Ammon's horn
4
CD4-positive helper T cell
4
CD4-positive, alpha-beta T cell
4
CyT49
4
Peyer's patch
4
aorta
4
blood vessel smooth muscle cell
4
breast epithelium
4
cardiac muscle cell
4
chorion membrane
4
chorionic villus
4
endocrine pancreas
4
endothelial cell of lymphatic vessel
4
enteric smooth muscle cell
4
epithelial cell of prostate
4
fibroblast of dermis
4
fibroblast of lung
4
foreskin fibroblast
4
frontal cortex
4
glomerular visceral epithelial cell
4
hepatic stellate cell
4
iPSC derived cell line
4
kidney tubule cell
4
megakaryocyte
4
mesendoderm
4
omental fat pad
4
pancreatic A cell
4
smooth muscle cell of the esophagus
4
testis
4
trophoblast
4
type B pancreatic cell
4
type I pneumocyte
4
upper lobe of left lung
3
cardiac fibroblast
3
GM18507
3
GM19240
3
H7-hESC
3
HAP-1
3
HCT116
3
HT-29
3
IMR-90
3
Jurkat
3
KARPAS-422 cell
3
LoVo cell
3
MM.1S
3
NAMALWA cell
3
OCI-LY7
3
PC-9
3
SK-N-DZ
3
SK-N-SH
3
U937
3
activated CD4-positive, alpha-beta T cell
3
ascending aorta
3
basal cell
3
bipolar neuron
3
bronchial epithelial cell
3
cardiomyocytes (cardiac muscle cell)
3
cerebellum
3
choroid plexus epithelial cell
3
ciliated cell
3
club cell
3
endocardial cell
3
endometrium adenocarcinoma
3
enteric neuron
3
enterocyte
3
esophagus
3
esophagus muscularis mucosa
3
esophagus squamous epithelium
3
eye
3
globus pallidus
3
glomerular endothelial cell
3
immortal human breast epithelial cell line cell
3
kidney glomerular epithelial cell
3
layer of hippocampus
3
left renal cortex interstitium
3
left renal pelvis
3
limb
3
medulla oblongata
3
mesothelial cell
3
midbrain
3
naive T cell
3
naive thymus-derived CD4-positive, alpha-beta T cell
3
neuron
3
neurosphere
Organ
6
blood vessel
6
epithelium
6
vasculature
6
vein
Life stage
3
newborn
Date released
2
September, 2022
1
June, 2020
1
March, 2020
1
May, 2020
1
May, 2021
Software used
2
r
1
abc
1
hiccups
1
macs
Lab
5
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
6
AMP
RFA
6
AMP
month_released!
May, 2022
Showing 6 of 6 results
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Download
FileSet
DSR936NVU
released
Annotation file set
: Target gene predictions for BSS00298 endothelial cell of umbilical vein from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR099GIV
released
Annotation file set
: Target gene predictions for BSS00296 endothelial cell of umbilical vein from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR784TGC
released
Annotation file set
: enhancer-gene predicton of endothelial_cell_of_umbilical_vein-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR690SAR
released
Annotation file set
: Accessible chromatin annotation for Cardiovascular HUVEC from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR603NLX
released
Annotation file set
: Accessible chromatin of endothelial cell of umbilical vein ENCODE DHSseq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR049KAF
released
Annotation file set
: A target gene prediction annotation in endothelial cell of umbilical vein of DSR430XOJ Hi-C
Lab:
AMP-T2D consortium
Project:
AMP