Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
5
accessible chromatin
2
binding sites
2
chromatin state
2
target gene predictions
Annotation Category
5
cis-regulatory elements
2
Target gene links
Annotation type Category
5
snATAC-seq
1
ATAC-seq
1
DNase-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
7
bed bed3+
5
bigWig
File set status
7
released
Genome assembly (visualization)
7
hg19
5
GRCh38
Organism
7
Homo sapiens
Biosample type
tissue
7
primary cell
Biosample term
52
HeLa-S3
39
H1-hESC
22
endothelial cell
21
monocyte
20
fibroblast
19
HFFc6
19
pericyte cell
18
K562
17
macrophage
15
CD14-positive monocyte
15
smooth muscle cell
13
excitatory neuron
11
astrocyte
11
neural progenitor cell
10
B cell
10
CD8-positive, alpha-beta T cell
10
adipocyte
10
hepatocyte
10
pancreatic beta cell
10
pituitary stalk
9
EndoC_BH1
9
pancreatic acinar cell
9
pancreatic alpha cell
9
pancreatic ductal cell
9
retinal pigment epithelial cell
8
GM12878
8
glutamatergic neuron
7
H9
7
T cell
7
embryonic stem cell
7
erythroblast
7
pancreatic delta cell
6
SGBS preadipocytes
6
colon epithelial cell
6
dendritic cell
6
endothelial cell of hepatic sinusoid
6
lymphocyte
6
memory B cell
6
natural killer cell
6
olfactory receptor cell
6
osteoblast
6
regulatory T cell
6
skeletal muscle satellite cell
6
type II pneumocyte
5
HUES8
5
chondrocyte
5
cortical cell of adrenal gland
5
fibroblast of cardiac tissue
5
gabaergic neuron
5
inhibitory neuron
5
keratinocyte
5
mesenchymal stem cell
5
naive B cell
5
naive thymus-derived CD8-positive, alpha-beta T cell
5
skeletal muscle fiber
4
CD4-positive helper T cell
4
CD4-positive, alpha-beta T cell
4
CyT49
4
HepG2
4
blood vessel smooth muscle cell
4
endothelial cell of lymphatic vessel
4
endothelial cell of umbilical vein
4
enteric smooth muscle cell
4
iPSC derived cell line
4
luminal epithelial cell of mammary gland
4
megakaryocyte
4
skin fibroblast
4
smooth muscle cell of the esophagus
4
type I muscle cell
4
type I pneumocyte
4
type II muscle cell
3
cardiac fibroblast
3
Jurkat
3
T-helper 1 cell
3
U937
3
activated CD4-positive, alpha-beta T cell
3
basal cell
3
cardiac muscle cell
3
cardiomyocytes (cardiac muscle cell)
3
ciliated cell
3
club cell
3
endocardial cell
3
enteric neuron
3
enterocyte
3
glomerular visceral epithelial cell
3
hepatic stellate cell
3
mammary gland epithelial cell
3
mesendoderm
3
mesothelial cell
3
naive thymus-derived CD4-positive, alpha-beta T cell
3
oligodendrocyte
3
oligodendrocyte precursor cell
3
pancreatic A cell
3
pancreatic polypeptide-secreting cell
3
pancreatic stellate cell
3
plasma cell
3
plasmacytoid dendritic cell
3
schwann cell
3
skeletal muscle myoblast
3
trophoblast cell
3
type B pancreatic cell
2
A549
2
BJAB cell
2
GM18507
2
GM19240
2
H7-hESC
2
HAP-1
2
HCT-116 cell
2
HCT116
2
HT-29
2
IMR-90
2
KARPAS-422 cell
2
LNCAP
2
LoVo cell
2
MCF 10A cell
2
MCF-7
2
MDA-MB-231 cell
2
MM.1S
2
Muller cell
2
NCCIT cell
2
OCI-LY7
2
PC-9
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
Rh-4 cell
2
T follicular helper cell
2
T-cell
2
T-helper 17 cell
2
T-helper 2 cell
2
THP-1
2
activated CD8-positive, alpha-beta T cell
2
acute myeloid leukemia cell
2
adipose-derived stem cell
2
alveolar macrophage
2
basal cell of epidermis
2
bipolar neuron
2
bone marrow cell
2
brain pericyte
2
capillary endothelial cell
2
cardiac endothelial cell
2
central memory CD8-positive, alpha-beta T cell
2
choroid plexus epithelial cell
2
colon goblet cell
2
conventional dendritic cell
2
differentiating adipose-derived stem cell
2
eccrine cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
enterochromaffin-like cell
2
enterocyte of epithelium of small intestine
2
epithelial cell of prostate
2
erythroid cell
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
fibroblast cell line
2
foreskin fibroblast
2
foveolar cell of stomach
2
gamma-delta T cell
2
glial cell
2
glomerular endothelial cell
2
granular cell of epidermis
2
intestinal tuft cell
2
kidney glomerular epithelial cell
2
kidney tubule cell
2
leukocyte
2
luteal cell
2
lymphocyte of B lineage (iPSC)
2
mammary epithelial cell
2
mast cell
2
mature NK T cell
2
mature natural killer cell
2
melanocyte
2
memory T cell
2
memory regulatory T cell
2
mesangial cell
2
microglial cell
2
myoepithelial cell
2
naive regulatory T cell
2
naive t cell
2
natural killer cell mediated cytotoxicity
2
neuron
2
neuronal stem cell
2
non keratinizing barrier epithelial cell
2
non-classical monocyte
2
paneth cell
2
parietal cell
2
peptic cell
2
regular atrial cardiac myocyte
2
renal cortical epithelial cell
2
respiratory goblet cell
2
skeletal muscle fibroblast
2
small intestine goblet cell
2
smooth muscle cell of the coronary artery
2
stellate neuron
2
stomach neuroendocrine cell
2
stromal cell
2
thyroid follicular cell
2
type I cell of adrenal cortex
2
type II cell of adrenal cortex
2
uterine smooth muscle cell
Date released
5
November, 2021
1
May, 2020
1
May, 2021
Software used
5
macs
1
abc
1
chicago
Lab
5
Bing Ren, UCSD
1
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
5
ENCODE
2
AMP
RFA
5
ENCODE3
2
AMP
biosample_type!
tissue
month_released!
September, 2022
Showing 7 of 7 results
table-tab-icon
matrix-icon
Download
FileSet
DSR509HZN
released
Annotation file set
: Accessible chromatin annotation of Fetal Erythroblast 5 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR960EYD
released
Annotation file set
: Accessible chromatin annotation of Fetal Erythroblast 4 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR116GJM
released
Annotation file set
: Accessible chromatin annotation of Fetal Erythroblast 3 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR508KIM
released
Annotation file set
: Accessible chromatin annotation of Fetal Erythroblast 2 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR372XPV
released
Annotation file set
: Accessible chromatin annotation of Fetal Erythroblast 1 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR876RQU
released
Annotation file set
: enhancer-gene predicton of erythroblast-Corces2016 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR617WXQ
released
Annotation file set
: Target gene predictions annotation of EGAS00001001911 promoter capture Hi-C of erythroblast
Lab:
AMP-T2D consortium
Project:
AMP