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Schema
Citing CMDGA
Clear Filters
Annotation type
6
candidate regulatory elements
5
target gene predictions
3
chromatin state
1
accessible chromatin
1
binding sites
1
histone modifications
Annotation Category
5
Target gene links
1
cis-regulatory elements
Annotation type Category
5
DNase-seq
3
ChIP-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
6
bed bed3+
File set status
6
released
Genome assembly (visualization)
6
hg19
Organism
6
Homo sapiens
Biosample type
3
in vitro differentiated cells
2
primary cell
1
stem cell
Biosample term
26
retina
25
heart
24
kidney
24
stomach
23
endothelial cell
20
fibroblast
20
monocyte
20
pericyte cell
20
pigmented layer of retina
19
CD14-positive monocyte
18
B cell
18
adrenal gland
18
brain
18
small intestine
17
lung
17
muscle of arm
16
muscle of leg
16
placenta
16
smooth muscle cell
15
large intestine
15
macrophage
15
neural progenitor cell
15
thymus
14
common myeloid progenitor, CD34-positive
14
liver
13
excitatory neuron
13
left lung
13
muscle of back
12
adipocyte
12
astrocyte
12
hepatocyte
12
right lung
11
T cell
11
hematopoietic multipotent progenitor cell
11
pancreatic beta cell
11
pancreatic ductal cell
11
renal pelvis
11
right kidney
10
CD8-positive, alpha-beta T cell
10
adipose tissue
10
heart left ventricle
10
pancreas
10
pancreatic acinar cell
10
pancreatic alpha cell
10
renal cortex interstitium
10
retinal pigment epithelial cell
10
spleen
9
CD4-positive, alpha-beta memory T cell
9
left kidney
9
natural killer cell
9
pancreatic delta cell
9
psoas muscle
9
regulatory T cell
9
spinal cord
8
glutamatergic neuron
8
islet of Langerhans
8
sigmoid colon
8
trophoblast cell
7
CD8-positive, alpha-beta memory T cell
7
embryonic stem cell
7
erythroblast
7
keratinocyte
7
mesenchymal stem cell
7
osteoblast
7
ovary
7
skeletal muscle satellite cell
6
T-helper 1 cell
6
colon epithelial cell
6
dendritic cell
6
fibroblast of cardiac tissue
6
gastrocnemius medialis
6
heart right ventricle
6
mammary gland epithelial cell
6
memory B cell
6
mononuclear cell
6
olfactory receptor cell
6
skin fibroblast
6
thyroid gland
6
tibial nerve
6
transverse colon
6
type II pneumocyte
5
SGBS preadipocytes
5
T-helper 17 cell
5
T-helper 2 cell
5
body of pancreas
5
caudate nucleus
5
chondrocyte
5
cortical cell of adrenal gland
5
foreskin keratinocyte
5
gabaergic neuron
5
inhibitory neuron
5
luminal epithelial cell of mammary gland
5
muscle of trunk
5
naive B cell
5
naive thymus-derived CD8-positive, alpha-beta T cell
5
pancreatic stellate cell
5
right atrium auricular region
5
skeletal muscle fiber
5
skeletal muscle myoblast
4
Ammon's horn
4
CD4-positive helper T cell
4
CD4-positive, alpha-beta T cell
4
Peyer's patch
4
blood vessel smooth muscle cell
4
breast epithelium
4
cardiac muscle cell
4
chorion membrane
4
chorionic villus
4
endocrine pancreas
4
endothelial cell of lymphatic vessel
4
enteric smooth muscle cell
4
fibroblast of dermis
4
fibroblast of lung
4
frontal cortex
4
hepatic stellate cell
4
kidney tubule cell
4
megakaryocyte
4
mesendoderm
4
omental fat pad
4
pancreatic A cell
4
smooth muscle cell of the esophagus
4
testis
4
trophoblast
4
type B pancreatic cell
4
type I muscle cell
4
type I pneumocyte
4
type II muscle cell
4
upper lobe of left lung
3
cardiac fibroblast
3
activated CD4-positive, alpha-beta T cell
3
basal cell
3
bipolar neuron
3
bronchial epithelial cell
3
cardiomyocytes (cardiac muscle cell)
3
cerebellum
3
ciliated cell
3
club cell
3
endocardial cell
3
enteric neuron
3
enterocyte
3
epithelial cell of prostate
3
esophagus
3
esophagus muscularis mucosa
3
esophagus squamous epithelium
3
eye
3
foreskin fibroblast
3
globus pallidus
3
glomerular endothelial cell
3
glomerular visceral epithelial cell
3
kidney glomerular epithelial cell
3
layer of hippocampus
3
left renal cortex interstitium
3
left renal pelvis
3
limb
3
medulla oblongata
3
mesothelial cell
3
midbrain
3
naive T cell
3
naive thymus-derived CD4-positive, alpha-beta T cell
3
neuron
3
neurosphere
3
neutrophil
3
occipital lobe
3
oligodendrocyte
3
oligodendrocyte precursor cell
3
pancreatic polypeptide-secreting cell
3
plasma cell
3
plasmacytoid dendritic cell
3
pons
3
prostate gland
3
putamen
3
renal cortical epithelial cell
3
right renal cortex interstitium
3
right renal pelvis
3
schwann cell
3
skeletal muscle tissue
3
superior temporal gyrus
3
tongue
3
urinary bladder
3
uterus
2
Brodmann (1909) area 46
2
CD1c-positive myeloid dendritic cell
2
Muller cell
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
T follicular helper cell
2
T-cell
2
activated CD8-positive, alpha-beta T cell
2
acute myeloid leukemia cell
2
adipose-derived stem cell
2
alveolar macrophage
2
angular gyrus
2
astrocyte of the cerebellum
2
astrocyte of the hippocampus
2
basal cell of epidermis
2
bone marrow cell
2
cardiac endothelial cell
2
central memory CD8-positive, alpha-beta T cell
2
cerebellar cortex
2
choroid plexus epithelial cell
2
cingulate gyrus
Life stage
2
adult
1
embryonic
Date released
3
September, 2022
1
June, 2020
1
March, 2020
1
May, 2021
Software used
3
r
1
abc
1
macs
1
nospecificsoft_customcode
Lab
5
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
6
AMP
RFA
6
AMP
biosample_type!
cell line
organ_slims!
blood vessel
Showing 6 of 6 results
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Download
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR099LJD
released
Annotation file set
: Target gene predictions for BSS00333 fibroblast of breast from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR494QLI
released
Annotation file set
: Target gene predictions for BSS00332 fibroblast of breast from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP