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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
4
accessible chromatin
2
candidate regulatory elements
2
chromatin state
1
binding sites
1
histone modifications
1
target gene predictions
1
variant allelic effects
Annotation Category
4
cis-regulatory elements
1
Target gene links
Annotation type Category
3
DNase-seq
1
ATAC-seq
1
pCHi-C
Available data
5
bed bed3+
2
bigWig
File set status
5
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
2
primary cell
1
cell line
1
in vitro differentiated cells
1
stem cell
Biosample term
51
HeLa-S3
38
H1-hESC
23
retina
20
monocyte
20
pigmented layer of retina
19
HFFc6
17
K562
17
endothelial cell
16
fibroblast
15
macrophage
13
excitatory neuron
11
neural progenitor cell
11
pancreatic beta cell
10
kidney
10
pancreatic alpha cell
10
pericyte cell
9
B cell
9
EndoC_BH1
9
pancreatic ductal cell
9
retinal pigment epithelial cell
9
smooth muscle cell
8
astrocyte
8
hepatocyte
8
islet of Langerhans
8
pancreatic acinar cell
8
pancreatic delta cell
7
CD8-positive, alpha-beta T cell
7
GM12878
7
T cell
7
embryonic stem cell
7
pancreas
6
H9
6
SGBS preadipocytes
6
adipocyte
6
endothelial cell of hepatic sinusoid
6
erythroblast
6
glutamatergic neuron
6
heart
6
liver
6
lymphocyte
6
olfactory receptor cell
6
regulatory T cell
5
HUES8
5
chondrocyte
5
heart left ventricle
5
inhibitory neuron
5
memory B cell
5
naive B cell
5
naive thymus-derived CD8-positive, alpha-beta T cell
5
natural killer cell
5
osteoblast
5
pancreatic stellate cell
5
skeletal muscle fiber
5
skeletal muscle satellite cell
4
CyT49
4
fibroblast of cardiac tissue
4
iPSC derived cell line
4
megakaryocyte
4
mesenchymal stem cell
4
psoas muscle
4
type II pneumocyte
3
cardiac fibroblast
3
Ammon's horn
3
CD4-positive, alpha-beta T cell
3
HepG2
3
T-helper 1 cell
3
activated CD4-positive, alpha-beta T cell
3
adipose tissue
3
cardiomyocytes (cardiac muscle cell)
3
colon epithelial cell
3
coronary artery
3
cortical cell of adrenal gland
3
endothelial cell of lymphatic vessel
3
endothelial cell of umbilical vein
3
enterocyte
3
gabaergic neuron
3
glomerular visceral epithelial cell
3
heart right ventricle
3
hepatic stellate cell
3
naive thymus-derived CD4-positive, alpha-beta T cell
3
pancreatic polypeptide-secreting cell
3
plasmacytoid dendritic cell
3
right atrium auricular region
3
skin fibroblast
3
spleen
3
stomach
3
thymus
3
tibial artery
3
tibial nerve
3
type I muscle cell
3
type I pneumocyte
3
type II muscle cell
2
CD4-positive helper T cell
2
GM18507
2
GM19240
2
HCT116
2
Muller cell
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
Rh-4 cell
2
T follicular helper cell
2
T-helper 17 cell
2
T-helper 2 cell
2
activated CD8-positive, alpha-beta T cell
2
acute myeloid leukemia cell
2
adipose-derived stem cell
2
adrenal gland
2
aorta
2
aortic endothelial cell
2
basal cell
2
blood vessel smooth muscle cell
2
bone marrow cell
2
brain
2
brain pericyte
2
capillary endothelial cell
2
cardiac muscle cell
2
caudate nucleus
2
central memory CD8-positive, alpha-beta T cell
2
choroid plexus epithelial cell
2
ciliated cell
2
club cell
2
conventional dendritic cell
2
differentiating adipose-derived stem cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
endocardial cell
2
enteric neuron
2
enteric smooth muscle cell
2
erythroid cell
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
fibroblast cell line
2
frontal cortex
2
gamma-delta T cell
2
glial cell
2
globus pallidus
2
glomerular endothelial cell
2
keratinocyte
2
kidney glomerular epithelial cell
2
kidney tubule cell
2
leukocyte
2
luminal epithelial cell of mammary gland
2
lymphocyte of B lineage (iPSC)
2
mammary gland epithelial cell
2
mature natural killer cell
2
medulla oblongata
2
memory T cell
2
memory regulatory T cell
2
mesangial cell
2
mesendoderm
2
mesothelial cell
2
midbrain
2
muscle of leg
2
naive regulatory T cell
2
natural killer cell mediated cytotoxicity
2
neuron
2
non-classical monocyte
2
occipital lobe
2
oligodendrocyte
2
oligodendrocyte precursor cell
2
omental fat pad
2
ovary
2
plasma cell
2
pons
2
putamen
2
renal cortical epithelial cell
2
renal pelvis
2
schwann cell
2
sigmoid colon
2
skeletal muscle myoblast
2
small intestine
2
smooth muscle cell of the esophagus
2
spinal cord
2
stellate neuron
2
subcutaneous adipose tissue
2
superior temporal gyrus
2
trophoblast
1
hindlimb muscle
1
786-O cell
1
A-673 cell
1
A172
1
A549
1
ACHN
1
AG04449 cell
1
AG04450 cell
1
AG08396 cell
1
AG09309 cell
1
AG09319 cell
1
AG10803 cell
1
B-Lymphocytes
1
B-lymphoblastoid cell line
1
B-lymphocyte
1
BE(2)-C
1
BJ cell
1
CD1c-positive myeloid dendritic cell
1
CD4-Positive T-Lymphocytes
1
CMK
1
COLO-829 cell
1
COLO205
1
Caco-2 cell
Organ
3
epithelium
3
kidney
Life stage
1
adult
1
child
Date released
2
June, 2020
1
August, 2021
1
January, 2020
1
March, 2020
Software used
4
macs
r
abc
1
nospecificsoft_customcode
Lab
4
AMP-T2D consortium
1
Katalin Susztak, Upenn
Project
5
AMP
RFA
4
AMP
1
AMP2
software_used.software.name!
abc
r
Showing 5 of 5 results
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Download
FileSet
DSR884VIR
released
Annotation file set
: Accessible chromatin from Katalin Susztak 75kidney Project of Podocytes
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR012KGK
released
Annotation file set
: Accessible chromatin annotation for Kidney Glomerular visceral epithelial cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR855KHX
released
Annotation file set
: Accessible chromatin annotation of kidney podocytes (glomerular visceral epithelial cell) from GSE115961 DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP