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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
4
target gene predictions
3
candidate regulatory elements
2
chromatin state
1
accessible chromatin
1
binding sites
1
histone modifications
Annotation Category
4
Target gene links
1
cis-regulatory elements
Annotation type Category
4
DNase-seq
2
ChIP-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
5
bed bed3+
File set status
5
released
Genome assembly (visualization)
5
hg19
Organism
5
Homo sapiens
Biosample type
4
in vitro differentiated cells
primary cell
1
stem cell
Biosample term
55
HeLa-S3
40
H1-hESC
26
retina
25
heart
24
K562
24
kidney
24
stomach
20
A549
20
pigmented layer of retina
19
HFFc6
18
adrenal gland
18
brain
18
small intestine
17
lung
17
muscle of arm
16
muscle of leg
16
placenta
15
large intestine
15
neural progenitor cell
15
thymus
14
liver
13
left lung
13
muscle of back
12
right lung
11
hematopoietic multipotent progenitor cell
renal pelvis
11
right kidney
10
adipocyte
10
adipose tissue
10
heart left ventricle
10
pancreas
10
pituitary stalk
10
renal cortex interstitium
10
spinal cord
10
spleen
9
EndoC_BH1
9
GM12878
9
left kidney
9
psoas muscle
8
H9
8
sigmoid colon
7
MCF-7
7
embryonic stem cell
7
islet of Langerhans
7
lymphocyte
7
ovary
6
SGBS preadipocytes
6
coronary artery
6
dendritic cell
6
gastrocnemius medialis
6
heart right ventricle
6
retinal pigment epithelial cell
6
thyroid gland
6
tibial nerve
6
transverse colon
5
HUES8
5
HepG2
5
body of pancreas
5
caudate nucleus
5
chondrocyte
5
mesenchymal stem cell
5
muscle of trunk
5
right atrium auricular region
5
tibial artery
4
Ammon's horn
4
CyT49
4
Peyer's patch
4
aorta
4
breast epithelium
4
chorion membrane
4
chorionic villus
4
endocrine pancreas
4
frontal cortex
4
iPSC derived cell line
4
mesendoderm
4
omental fat pad
4
testis
4
trophoblast
4
upper lobe of left lung
3
GM18507
3
GM19240
3
H7-hESC
3
HAP-1
3
HCT116
3
HT-29
3
IMR-90
3
Jurkat
3
KARPAS-422 cell
3
LoVo cell
3
MM.1S
3
NAMALWA cell
3
OCI-LY7
3
PC-9
3
SK-N-DZ
3
SK-N-SH
3
U937
3
ascending aorta
bipolar neuron
3
cardiomyocytes (cardiac muscle cell)
3
cerebellum
3
endometrium adenocarcinoma
3
esophagus
3
esophagus muscularis mucosa
3
esophagus squamous epithelium
3
eye
3
globus pallidus
3
immortal human breast epithelial cell line cell
3
layer of hippocampus
3
left renal cortex interstitium
3
left renal pelvis
3
limb
3
medulla oblongata
3
midbrain
3
occipital lobe
3
pons
3
prostate gland
3
putamen
3
right renal cortex interstitium
3
right renal pelvis
3
skeletal muscle tissue
3
superior temporal gyrus
3
thoracic aorta
3
tongue
3
urinary bladder
3
uterus
2
22Rv1
2
A172
2
A673
2
ACHN
2
AG04449 cell
2
AG04450 cell
2
AG08396 cell
2
AG09309 cell
2
AG09319 cell
2
AG10803 cell
2
B cell
2
BE(2)-C
2
BJ cell
2
BJAB cell
2
Brodmann (1909) area 46
2
CMK
2
Caco-2 cell
2
Caki2
2
Daoy
2
GM03348
2
GM04503
2
GM04504
2
GM06990
2
GM10248
2
GM10266
2
GM12864
2
GM12865
2
GM19238
2
GM19239
2
GM23248
2
H4
2
HCT-116 cell
2
HEK293
2
HL-60
2
HUES6
2
HuH-7
2
KBM-7
2
L1-S8
2
L1-S8R
2
LHCN-M2
2
LNCAP
2
LNCaP clone FGC
2
M059J
2
MCF 10A cell
2
MDA-MB-231 cell
2
MG63
2
NCCIT cell
2
NCI-H226 cell
2
NT2-D1 cell
2
PC-3
2
Panc1
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
RCC 7860
2
RPMI7951
2
RPMI8226
2
RWPE1
2
Rh-4 cell
2
SJCRH30
2
SJSA1
2
SK-N-MC
2
SW480
2
T47D
2
THP-1
2
WERI-Rb-1
2
adipose-derived stem cell
2
angular gyrus
2
cardiac muscle cell
2
cerebellar cortex
2
cingulate gyrus
2
colonic mucosa
2
differentiating adipose-derived stem cell
2
duodenal mucosa
2
embryonic facial prominence
2
endodermal cell
2
fibroblast cell line
Organ
5
connective tissue
Life stage
1
adult
1
embryonic
Date released
2
September, 2022
1
June, 2020
1
March, 2020
1
May, 2021
Software used
2
r
1
abc
1
macs
1
nospecificsoft_customcode
Lab
4
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
5
AMP
RFA
5
AMP
biosample_term_name!
bipolar neuron
renal pelvis
biosample_type!
primary cell
Showing 5 of 5 results
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Download
FileSet
DSR607MNF
released
Annotation file set
: Target gene predictions for BSS01261 mesenchymal stem cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR391CWH
released
Annotation file set
: Target gene predictions for BSS01260 mesenchymal stem cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR170XIW
released
Annotation file set
: enhancer-gene predicton of H1_Derived_Mesenchymal_Stem_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR497YXK
released
Annotation file set
: Accessible chromatin annotation for Others Mesenchymal stem cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR333DPA
released
Annotation file set
: A target gene prediction annotation in Human Mesenchymal Stem Cell of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP