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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
accessible chromatin
3
target gene predictions
2
candidate regulatory elements
1
binding sites
1
caQTL
1
chromatin state
1
eQTL
1
gene expression
1
histone modifications
Annotation Category
3
Target gene links
3
cis-regulatory elements
Annotation type Category
3
DNase-seq
2
snATAC-seq
1
ATAC-seq
1
ChIP-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
6
bed bed3+
1
bigWig
File set status
6
released
Genome assembly (visualization)
6
hg19
Organism
6
Homo sapiens
Biosample type
3
in vitro differentiated cells
2
primary cell
1
stem cell
Biosample term
52
HeLa-S3
40
H1-hESC
23
heart
22
kidney
21
endothelial cell
21
monocyte
20
pericyte cell
19
HFFc6
19
stomach
18
K562
18
brain
fibroblast
17
muscle of arm
16
CD14-positive monocyte
16
lung
16
macrophage
16
muscle of leg
16
placenta
16
small intestine
15
large intestine
15
neural progenitor cell
15
smooth muscle cell
15
thymus
13
excitatory neuron
13
left lung
13
muscle of back
12
B cell
12
adrenal gland
12
astrocyte
12
right lung
11
adipocyte
renal pelvis
11
right kidney
10
CD8-positive, alpha-beta T cell
10
pancreatic ductal cell
10
pituitary stalk
10
renal cortex interstitium
10
retinal pigment epithelial cell
10
spinal cord
9
EndoC_BH1
9
left kidney
9
pancreatic acinar cell
8
GM12878
8
H9
8
pancreatic beta cell
8
trophoblast cell
7
T cell
7
colon epithelial cell
7
embryonic stem cell
7
erythroblast
7
fibroblast of cardiac tissue
7
hepatocyte
7
keratinocyte
7
liver
7
lymphocyte
7
pancreatic alpha cell
7
pancreatic delta cell
7
regulatory T cell
6
CD4-positive, alpha-beta memory T cell
6
SGBS preadipocytes
6
dendritic cell
6
endothelial cell of umbilical vein
6
memory B cell
6
mesenchymal stem cell
6
natural killer cell
6
olfactory receptor cell
6
osteoblast
6
skeletal muscle satellite cell
6
skin fibroblast
6
spleen
6
type II pneumocyte
5
HUES8
5
T-helper 17 cell
5
chondrocyte
5
cortical cell of adrenal gland
5
foreskin keratinocyte
5
heart left ventricle
5
inhibitory neuron
5
muscle of trunk
5
naive B cell
5
naive thymus-derived CD8-positive, alpha-beta T cell
5
psoas muscle
5
retina
5
skeletal muscle fiber
4
CD4-positive helper T cell
4
CD4-positive, alpha-beta T cell
4
CyT49
4
HepG2
4
T-helper 1 cell
4
adipose tissue
4
blood vessel smooth muscle cell
4
cardiac muscle cell
4
chorion membrane
4
chorionic villus
4
common myeloid progenitor, CD34-positive
4
endothelial cell of lymphatic vessel
4
enteric smooth muscle cell
4
epithelial cell of prostate
4
foreskin fibroblast
4
gabaergic neuron
4
glutamatergic neuron
4
heart right ventricle
4
iPSC derived cell line
4
luminal epithelial cell of mammary gland
4
mammary gland epithelial cell
4
megakaryocyte
4
mesendoderm
4
ovary
4
pancreas
4
pancreatic A cell
4
pancreatic stellate cell
4
sigmoid colon
4
skeletal muscle myoblast
4
smooth muscle cell of the esophagus
4
trophoblast
4
type B pancreatic cell
4
type I muscle cell
4
type I pneumocyte
4
type II muscle cell
3
GM18507
3
H7-hESC
3
IMR-90
3
Jurkat
3
NAMALWA cell
3
PC-9
3
SK-N-DZ
3
SK-N-SH
3
T-helper 2 cell
3
U937
3
activated CD4-positive, alpha-beta T cell
3
basal cell
3
bronchial epithelial cell
3
choroid plexus epithelial cell
3
ciliated cell
3
club cell
3
coronary artery
3
endocardial cell
3
enteric neuron
3
enterocyte
3
eye
3
fibroblast of dermis
3
fibroblast of lung
3
glomerular endothelial cell
3
glomerular visceral epithelial cell
3
left renal cortex interstitium
3
left renal pelvis
3
limb
3
mesothelial cell
3
naive thymus-derived CD4-positive, alpha-beta T cell
3
neurosphere
3
neutrophil
3
oligodendrocyte precursor cell
3
plasma cell
3
plasmacytoid dendritic cell
3
renal cortical epithelial cell
3
right renal cortex interstitium
3
right renal pelvis
3
schwann cell
3
tongue
2
cardiac fibroblast
2
22Rv1
2
A549
2
A673
2
AG04449 cell
2
AG04450 cell
2
Ammon's horn
2
BE(2)-C
2
BJ cell
2
BJAB cell
2
CD1c-positive myeloid dendritic cell
2
CD8-positive, alpha-beta memory T cell
2
CMK
2
Daoy
2
GM03348
2
GM06990
2
GM12864
2
GM12865
2
GM19240
2
HAP-1
2
HCT-116 cell
2
HCT116
2
HEK293
2
HT-29
2
HUES6
2
KARPAS-422 cell
2
L1-S8
2
L1-S8R
2
LNCAP
2
LoVo cell
2
MCF 10A cell
2
MCF-7
2
MDA-MB-231 cell
2
MG63
2
MM.1S
2
Muller cell
2
NCCIT cell
2
NT2-D1 cell
2
OCI-LY7
2
Panc1
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
Organ
6
connective tissue
Life stage
adult
1
embryonic
1
unknown
Date released
1
February, 2024
1
June, 2020
1
March, 2020
1
May, 2021
1
May, 2022
1
September, 2022
Software used
3
macs
1
abc
1
nospecificsoft_customcode
1
r
Lab
4
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
1
Stephen Parker, UMich
Project
6
AMP
RFA
5
AMP
1
AMP2
biosample_term_name!
fibroblast
renal pelvis
relevant_life_stage!
adult
Showing 6 of 6 results
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Download
FileSet
DSR607MNF
released
Annotation file set
: Target gene predictions for BSS01261 mesenchymal stem cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR707RQM
released
Annotation file set
: Accessible chromatin from snATAC-seq of mesenchymal stem cell from human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR847RRB
released
Annotation file set
: Cell type chromatin broad peaks and bw of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR170XIW
released
Annotation file set
: enhancer-gene predicton of H1_Derived_Mesenchymal_Stem_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR497YXK
released
Annotation file set
: Accessible chromatin annotation for Others Mesenchymal stem cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR333DPA
released
Annotation file set
: A target gene prediction annotation in Human Mesenchymal Stem Cell of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP