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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
4
candidate regulatory elements
4
target gene predictions
3
accessible chromatin
3
chromatin state
1
binding sites
1
caQTL
1
eQTL
1
gene expression
1
histone modifications
Annotation Category
4
Target gene links
3
cis-regulatory elements
Annotation type Category
4
DNase-seq
2
ChIP-seq
2
snATAC-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
7
bed bed3+
1
bigWig
File set status
7
released
Genome assembly (visualization)
7
hg19
Organism
7
Homo sapiens
Biosample type
4
in vitro differentiated cells
2
primary cell
1
stem cell
Biosample term
55
HeLa-S3
40
H1-hESC
26
retina
25
heart
24
K562
24
kidney
24
stomach
23
endothelial cell
21
monocyte
20
A549
20
fibroblast
20
pericyte cell
20
pigmented layer of retina
19
CD14-positive monocyte
19
HFFc6
18
B cell
18
adrenal gland
18
brain
18
small intestine
17
lung
17
macrophage
17
muscle of arm
16
muscle of leg
placenta
16
smooth muscle cell
15
large intestine
15
neural progenitor cell
15
thymus
14
common myeloid progenitor, CD34-positive
14
liver
13
excitatory neuron
13
left lung
13
muscle of back
12
adipocyte
12
astrocyte
12
hepatocyte
12
right lung
11
T cell
11
hematopoietic multipotent progenitor cell
11
pancreatic beta cell
11
pancreatic ductal cell
11
renal pelvis
11
right kidney
10
CD8-positive, alpha-beta T cell
10
adipose tissue
10
heart left ventricle
10
pancreas
10
pancreatic acinar cell
10
pancreatic alpha cell
10
pituitary stalk
10
renal cortex interstitium
10
retinal pigment epithelial cell
10
spinal cord
10
spleen
9
CD4-positive, alpha-beta memory T cell
9
EndoC_BH1
9
GM12878
9
left kidney
9
natural killer cell
9
pancreatic delta cell
9
psoas muscle
9
regulatory T cell
8
H9
8
fibroblast of cardiac tissue
8
glutamatergic neuron
8
islet of Langerhans
8
sigmoid colon
8
trophoblast cell
7
CD8-positive, alpha-beta memory T cell
7
MCF-7
7
colon epithelial cell
7
embryonic stem cell
7
erythroblast
7
keratinocyte
7
lymphocyte
7
mesenchymal stem cell
7
osteoblast
7
ovary
7
skeletal muscle satellite cell
6
SGBS preadipocytes
6
T-helper 1 cell
6
coronary artery
6
dendritic cell
6
endothelial cell of hepatic sinusoid
6
endothelial cell of umbilical vein
6
gastrocnemius medialis
6
heart right ventricle
6
mammary gland epithelial cell
6
memory B cell
6
mononuclear cell
6
olfactory receptor cell
6
skin fibroblast
6
thyroid gland
6
tibial nerve
6
transverse colon
type II pneumocyte
5
HUES8
5
HepG2
5
T-helper 17 cell
5
T-helper 2 cell
5
body of pancreas
5
caudate nucleus
5
chondrocyte
5
cortical cell of adrenal gland
5
foreskin keratinocyte
5
gabaergic neuron
5
inhibitory neuron
5
luminal epithelial cell of mammary gland
5
muscle of trunk
5
naive B cell
naive thymus-derived CD8-positive, alpha-beta T cell
5
pancreatic stellate cell
5
right atrium auricular region
5
skeletal muscle fiber
5
skeletal muscle myoblast
5
tibial artery
4
Ammon's horn
4
CD4-positive helper T cell
4
CD4-positive, alpha-beta T cell
4
CyT49
4
Peyer's patch
4
aorta
4
blood vessel smooth muscle cell
4
breast epithelium
4
cardiac muscle cell
4
chorion membrane
4
chorionic villus
4
endocrine pancreas
4
endothelial cell of lymphatic vessel
4
enteric smooth muscle cell
4
epithelial cell of prostate
4
fibroblast of dermis
4
fibroblast of lung
4
foreskin fibroblast
4
frontal cortex
4
glomerular visceral epithelial cell
4
hepatic stellate cell
4
iPSC derived cell line
4
kidney tubule cell
4
megakaryocyte
4
mesendoderm
4
omental fat pad
4
pancreatic A cell
4
smooth muscle cell of the esophagus
4
testis
4
trophoblast
4
type B pancreatic cell
4
type I muscle cell
4
type I pneumocyte
4
type II muscle cell
4
upper lobe of left lung
3
cardiac fibroblast
3
GM18507
3
GM19240
3
H7-hESC
3
HAP-1
3
HCT116
3
HT-29
3
IMR-90
3
Jurkat
3
KARPAS-422 cell
3
LoVo cell
3
MM.1S
3
NAMALWA cell
3
OCI-LY7
3
PC-9
3
SK-N-DZ
3
SK-N-SH
3
U937
3
activated CD4-positive, alpha-beta T cell
3
ascending aorta
3
basal cell
3
bipolar neuron
3
bronchial epithelial cell
3
cardiomyocytes (cardiac muscle cell)
3
cerebellum
3
choroid plexus epithelial cell
3
ciliated cell
3
club cell
3
endocardial cell
3
endometrium adenocarcinoma
3
enteric neuron
3
enterocyte
3
esophagus
3
esophagus muscularis mucosa
3
esophagus squamous epithelium
3
eye
3
globus pallidus
3
glomerular endothelial cell
3
immortal human breast epithelial cell line cell
3
kidney glomerular epithelial cell
3
layer of hippocampus
3
left renal cortex interstitium
3
left renal pelvis
3
limb
3
medulla oblongata
3
mesothelial cell
3
midbrain
3
naive T cell
3
naive thymus-derived CD4-positive, alpha-beta T cell
Organ
7
connective tissue
Life stage
1
adult
1
embryonic
1
unknown
Date released
2
September, 2022
1
February, 2024
1
June, 2020
1
March, 2020
1
May, 2021
1
May, 2022
Software used
3
macs
2
r
1
abc
1
nospecificsoft_customcode
Lab
5
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
1
Stephen Parker, UMich
Project
7
AMP
RFA
6
AMP
1
AMP2
biosample_term_name!
naive thymus-derived CD8-positive, alpha-beta T cell
placenta
type II pneumocyte
Showing 7 of 7 results
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Download
FileSet
DSR607MNF
released
Annotation file set
: Target gene predictions for BSS01261 mesenchymal stem cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR391CWH
released
Annotation file set
: Target gene predictions for BSS01260 mesenchymal stem cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR707RQM
released
Annotation file set
: Accessible chromatin from snATAC-seq of mesenchymal stem cell from human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR847RRB
released
Annotation file set
: Cell type chromatin broad peaks and bw of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR170XIW
released
Annotation file set
: enhancer-gene predicton of H1_Derived_Mesenchymal_Stem_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR497YXK
released
Annotation file set
: Accessible chromatin annotation for Others Mesenchymal stem cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR333DPA
released
Annotation file set
: A target gene prediction annotation in Human Mesenchymal Stem Cell of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP