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Schema
Citing CMDGA
Clear Filters
Annotation type
5
accessible chromatin
3
differential activity
3
target gene predictions
2
gene expression
1
caQTL
1
eQTL
1
variant allelic effects
Annotation Category
5
cis-regulatory elements
3
Target gene links
Annotation type Category
4
snATAC-seq
2
ATAC-seq
2
DNase-seq
2
H3K27ac ChIP-Seq
Available data
7
bed bed3+
4
bigWig
1
bigBed narrowPeak
File set status
8
released
Genome assembly (visualization)
8
hg19
2
GRCh38
Organism
8
Homo sapiens
Biosample type
5
primary cell
2
tissue
1
in vitro differentiated cells
Biosample term
15
CD14-positive monocyte
10
pituitary stalk
7
kidney
6
dendritic cell
6
endothelial cell
6
hepatocyte
6
pancreatic alpha cell
6
pancreatic beta cell
6
pancreatic delta cell
6
pancreatic ductal cell
5
adipocyte
5
macrophage
5
pancreatic acinar cell
5
pancreatic stellate cell
4
CD8-positive, alpha-beta T cell
4
endothelial cell of hepatic sinusoid
4
natural killer cell
3
CD4-positive helper T cell
3
monocyte
3
pancreatic polypeptide-secreting cell
2
B cell
2
BJAB cell
2
Jurkat
2
MCF 10A cell
2
T cell
2
T-cell
2
THP-1
2
U937
2
activated CD4-positive, alpha-beta T cell
2
activated CD8-positive, alpha-beta T cell
2
adrenal gland
2
capillary endothelial cell
2
conventional dendritic cell
2
extracellular matrix secreting cell
2
fibroblast
2
liver
2
megakaryocyte
2
memory B cell
2
mesenchymal stem cell
2
naive B cell
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
natural killer cell mediated cytotoxicity
2
non-classical monocyte
2
pancreatic A cell
2
plasmacytoid dendritic cell
2
regulatory T cell
2
skeletal muscle fiber
2
smooth muscle cell
2
stellate neuron
2
stomach
2
trophoblast cell
2
type B pancreatic cell
1
A549
1
A673
1
B cell, CD19-positive
1
CD56-positive, CD161-positive immature natural killer cell
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
GM12878
1
H1-hESC
1
H7-hESC
1
H9
1
HAP-1
1
HCT-116 cell
1
HT-29
1
HeLa-S3
1
HepG2
1
Human Mesenchymal Cell derived Adipocytes
1
Human Mesenchymal Cell derived Osteoblasts
1
IMR-90
1
K562
1
KARPAS-422 cell
1
LNCAP
1
LoVo cell
1
MCF-7
1
MDA-MB-231 cell
1
MM.1S
1
NCCIT cell
1
OCI-LY7
1
PC-9
1
Panc1
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
SK-N-SH
1
Schwann cell
1
adipose tissue
1
astrocyte
1
basal cell
1
beige adipocyte
1
bipolar neuron
1
body of pancreas
1
breast epithelium
1
cardiac muscle cell
1
cardiac ventricle
1
cell
1
ciliated cell
1
club cell
1
common myeloid progenitor, CD34-positive
1
coronary artery
1
embryonic stem cell
1
endothelial cell of artery
1
endothelial cell of lymphatic vessel
1
endothelial cell of umbilical vein
1
epithelial cell of prostate
1
erythroblast
1
erythrocyte
1
fibroblast of arm
1
fibroblast of dermis
1
fibroblast of lung
1
foreskin fibroblast
1
gastrocnemius medialis
1
glial cell
1
glomerular visceral epithelial cell
1
iPS DF 19.11
1
induced pluripotent stem cell
1
keratinocyte
1
kidney distal convoluted tubule epithelial cell
1
kidney interstitial cell
1
kidney loop of Henle epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
large intestine
1
leukocyte
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
mammary epithelial cell
1
megakaryocyte-erythroid progenitor cell
1
mesendoderm
1
muscle of leg
1
muscle of trunk
1
myofibroblast cell
1
myotube
1
neural cell
1
neuroendocrine cell
1
neuron cell of Hypothalamus (neuron)
1
neuronal stem cell
1
osteoblast
1
ovary
1
pancreas
1
pancreatic D cell
1
pancreatic PP cell
1
pancreatic endothelial cell
1
pancreatic immune cell
1
pericyte cell
1
placenta
1
proximal tubule cells with injury markers
1
psoas muscle
1
renal intercalated cell
1
renal principal cell
1
sigmoid colon
1
skeletal muscle myoblast
1
skeletal muscle satellite cell
1
small intestine
1
smooth muscle cell of the coronary artery
1
spinal cord
1
spleen
1
thymus
1
thyroid gland
1
tissue-resident macrophage
1
transverse colon
1
type I muscle cell
1
type I pneumocyte
1
type II muscle cell
1
type II pneumocyte
1
undifferentiated ESC (H9 cell line)
1
uterus
1
white adipose tissue
Organ
6
epithelium
6
pancreas
2
connective tissue
Life stage
1
adult
Date released
4
February, 2024
November, 2021
2
January, 2021
2
May, 2021
Software used
5
macs
2
abc
1
cicero
Lab
AMP-T2D consortium
5
Kyle Gaulton, UCSD
2
Jesse Engreitz, Stanford University
1
Stephen Parker, UMich
Project
6
AMP
2
T1D
RFA
5
AMP
2
T1D
1
AMP2
lab.title!
AMP-T2D consortium
month_released!
November, 2021
Showing 8 of 8 results
table-tab-icon
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Download
FileSet
DSR473EZY
released
Annotation file set
: accessible chromatin annotation from scATAC-seq of MUC5B Ductal
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR183WZN
released
Annotation file set
: accessible chromatin annotation from scATAC-seq of Ductal
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR847RRB
released
Annotation file set
: Cell type chromatin broad peaks and bw of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR051SJQ
released
Annotation file set
: enhancer-gene predicton of pancreatic-ductal-cell-AMP from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR170XIW
released
Annotation file set
: enhancer-gene predicton of H1_Derived_Mesenchymal_Stem_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR946TIV
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of ductal
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR780YWW
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of ductal
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR553FGJ
released
Annotation file set
: pancreatic ductal cell accessible chromatin annotation from snATAC
Lab:
Kyle Gaulton, UCSD
Project:
AMP