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Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
2
target gene predictions
1
chromatin state
0
accessible chromatin
Annotation Category
2
Target gene links
Annotation type Category
1
ChIP-seq
1
DNase-seq
1
pCHi-C
Available data
2
bed bed3+
File set status
2
released
Genome assembly (visualization)
2
hg19
Organism
2
Homo sapiens
Biosample type
1
in vitro differentiated cells
1
stem cell
Biosample term
54
HeLa-S3
38
H1-hESC
22
K562
20
heart
19
HFFc6
19
stomach
18
A549
17
lung
16
brain
16
muscle of arm
16
small intestine
15
adrenal gland
14
kidney
14
placenta
13
common myeloid progenitor, CD34-positive
13
large intestine
13
left lung
13
muscle of back
13
muscle of leg
13
thymus
12
B cell
11
right kidney
11
right lung
10
hematopoietic multipotent progenitor cell
9
CD4-positive, alpha-beta memory T cell
9
left kidney
9
liver
9
renal cortex interstitium
9
renal pelvis
7
CD8-positive, alpha-beta memory T cell
7
GM12878
7
H9
7
adipose tissue
7
heart left ventricle
7
lymphocyte
7
psoas muscle
7
spinal cord
7
spleen
6
mononuclear cell
6
natural killer cell
6
olfactory receptor cell
6
regulatory T cell
6
sigmoid colon
5
MCF-7
5
T cell
5
T-helper 1 cell
5
T-helper 17 cell
5
T-helper 2 cell
5
heart right ventricle
5
neural progenitor cell
5
ovary
5
trophoblast cell
4
CD14-positive monocyte
4
CD8-positive, alpha-beta T cell
4
CyT49
4
HUES8
4
aorta
4
body of pancreas
4
chorionic villus
4
endocrine pancreas
4
endothelial cell of umbilical vein
4
foreskin keratinocyte
4
gastrocnemius medialis
4
iPSC derived cell line
4
monocyte
4
muscle of trunk
4
naive B cell
4
naive thymus-derived CD8-positive, alpha-beta T cell
4
pancreas
4
thyroid gland
4
transverse colon
3
HCT116
3
Peyer's patch
3
cardiomyocytes (cardiac muscle cell)
3
caudate nucleus
3
chorion membrane
3
endometrium adenocarcinoma
3
esophagus
3
fibroblast of cardiac tissue
3
fibroblast of dermis
3
fibroblast of lung
3
immortal human breast epithelial cell line cell
3
islet of Langerhans
3
layer of hippocampus
3
left renal cortex interstitium
3
macrophage
3
mammary gland epithelial cell
3
memory B cell
3
mesenchymal stem cell
3
naive T cell
3
neurosphere
3
neutrophil
3
pancreatic alpha cell
3
pancreatic beta cell
3
pancreatic delta cell
3
retina
3
right renal cortex interstitium
3
skeletal muscle myoblast
3
skeletal muscle tissue
3
testis
3
tibial nerve
3
trophoblast
3
upper lobe of left lung
2
22Rv1
2
Ammon's horn
2
Brodmann (1909) area 46
2
CD4-positive, alpha-beta T cell
2
GM18507
2
GM19238
2
GM19239
2
GM19240
2
HepG2
2
LNCaP clone FGC
2
NAMALWA cell
2
SK-N-DZ
2
SK-N-SH
2
T follicular helper cell
2
T47D
2
activated CD4-positive, alpha-beta T cell
2
adipocyte
2
angular gyrus
2
ascending aorta
2
breast epithelium
2
bronchial epithelial cell
2
capillary endothelial cell
2
central memory CD8-positive, alpha-beta T cell
2
cerebellum
2
cingulate gyrus
2
colonic mucosa
2
coronary artery
2
dermis blood vessel endothelial cell
2
dermis lymphatic vessel endothelial cell
2
duodenal mucosa
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
endodermal cell
2
epithelial cell of prostate
2
esophagus muscularis mucosa
2
esophagus squamous epithelium
2
extracellular matrix secreting cell
2
eye
2
fibroblast of breast
2
foreskin fibroblast
2
frontal cortex
2
gamma-delta T cell
2
hepatocyte
keratinocyte
2
kidney tubule cell
2
left renal pelvis
2
limb
2
lower leg skin
2
lymphocyte of B lineage (iPSC)
2
mature natural killer cell
2
medulla oblongata
2
megakaryocyte
2
memory T cell
2
memory regulatory T cell
2
mesendoderm
2
midbrain
2
mucosa of rectum
2
muscle cell
2
muscle layer of colon
2
muscle layer of duodenum
2
myoepithelial cell of mammary gland
2
naive regulatory T cell
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
omental fat pad
2
parathyroid adenoma
2
pericyte cell
2
plasmacytoid dendritic cell
2
prostate gland
2
right atrium auricular region
2
right cardiac atrium
2
right renal pelvis
2
skin fibroblast
2
stomach smooth muscle
2
substantia nigra
2
temporal lobe
2
thoracic aorta
2
tibial artery
2
tongue
2
urinary bladder
2
vagina
1
8988T
1
A172
1
A673
1
ACC112
1
ACHN
1
AG04449 cell
1
AG04450 cell
1
AG08395 cell
1
AG08396 cell
1
AG09309 cell
1
AG09319 cell
1
AG10803 cell
1
AG20443
1
B-lymphoblastoid cell line
1
BE(2)-C
1
BJ cell
Life stage
1
embryonic
Date released
1
March, 2020
1
September, 2022
Software used
abc
macs
1
nospecificsoft_customcode
1
r
Lab
2
AMP-T2D consortium
Project
2
AMP
RFA
2
AMP
biosample_term_name!
keratinocyte
software_used.software.name!
abc
macs
Showing 2 of 2 results
table-tab-icon
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Download
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP