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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
2
target gene predictions
1
accessible chromatin
1
binding sites
1
chromatin state
1
histone modifications
Annotation Category
2
Target gene links
1
cis-regulatory elements
Annotation type Category
2
DNase-seq
1
ChIP-seq
1
pCHi-C
Available data
3
bed bed3+
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
2
in vitro differentiated cells
1
stem cell
Biosample term
54
HeLa-S3
39
H1-hESC
26
retina
25
heart
24
kidney
23
K562
22
stomach
20
monocyte
20
pigmented layer of retina
19
A549
19
HFFc6
18
brain
17
B cell
17
endothelial cell
17
lung
17
muscle of arm
17
small intestine
16
adrenal gland
16
fibroblast
15
macrophage
15
muscle of leg
15
neural progenitor cell
15
placenta
14
large intestine
14
thymus
13
common myeloid progenitor, CD34-positive
13
excitatory neuron
13
left lung
13
liver
13
muscle of back
12
right lung
11
T cell
11
hematopoietic multipotent progenitor cell
11
pancreatic beta cell
11
pericyte cell
11
renal pelvis
11
right kidney
10
heart left ventricle
10
hepatocyte
10
pancreatic alpha cell
10
renal cortex interstitium
10
retinal pigment epithelial cell
10
smooth muscle cell
9
CD4-positive, alpha-beta memory T cell
9
EndoC_BH1
9
adipose tissue
9
astrocyte
9
left kidney
9
pancreas
9
pancreatic ductal cell
9
regulatory T cell
9
spinal cord
9
spleen
8
GM12878
8
adipocyte
8
islet of Langerhans
8
natural killer cell
8
pancreatic acinar cell
8
pancreatic delta cell
8
psoas muscle
7
CD8-positive, alpha-beta T cell
7
CD8-positive, alpha-beta memory T cell
7
H9
7
embryonic stem cell
7
fibroblast of cardiac tissue
7
lymphocyte
7
sigmoid colon
6
MCF-7
6
SGBS preadipocytes
6
T-helper 1 cell
6
endothelial cell of hepatic sinusoid
6
erythroblast
6
glutamatergic neuron
6
heart right ventricle
mesenchymal stem cell
6
mononuclear cell
6
olfactory receptor cell
6
osteoblast
6
ovary
6
skeletal muscle satellite cell
6
tibial nerve
6
trophoblast cell
5
HUES8
5
T-helper 17 cell
5
T-helper 2 cell
5
caudate nucleus
5
chondrocyte
5
coronary artery
5
endothelial cell of umbilical vein
5
foreskin keratinocyte
5
gastrocnemius medialis
5
inhibitory neuron
mammary gland epithelial cell
5
memory B cell
5
naive B cell
5
naive thymus-derived CD8-positive, alpha-beta T cell
5
pancreatic stellate cell
5
right atrium auricular region
5
skeletal muscle fiber
5
skin fibroblast
5
thyroid gland
5
tibial artery
5
transverse colon
4
Ammon's horn
4
CD14-positive monocyte
4
CyT49
4
HepG2
4
Peyer's patch
4
aorta
4
body of pancreas
4
chorion membrane
4
chorionic villus
4
colon epithelial cell
4
endocrine pancreas
4
frontal cortex
4
glomerular visceral epithelial cell
4
hepatic stellate cell
4
iPSC derived cell line
4
keratinocyte
4
kidney tubule cell
4
megakaryocyte
4
muscle of trunk
4
omental fat pad
4
skeletal muscle myoblast
4
testis
4
trophoblast
4
type II pneumocyte
4
upper lobe of left lung
3
cardiac fibroblast
3
CD4-positive, alpha-beta T cell
3
GM18507
3
GM19240
3
HCT116
3
NAMALWA cell
3
SK-N-DZ
3
activated CD4-positive, alpha-beta T cell
3
ascending aorta
3
breast epithelium
3
bronchial epithelial cell
3
cardiac muscle cell
3
cardiomyocytes (cardiac muscle cell)
3
cerebellum
3
choroid plexus epithelial cell
3
cortical cell of adrenal gland
3
endometrium adenocarcinoma
3
endothelial cell of lymphatic vessel
3
enterocyte
3
epithelial cell of prostate
3
esophagus
3
esophagus muscularis mucosa
3
esophagus squamous epithelium
3
eye
3
fibroblast of dermis
3
fibroblast of lung
3
foreskin fibroblast
3
gabaergic neuron
3
globus pallidus
3
glomerular endothelial cell
3
immortal human breast epithelial cell line cell
3
kidney glomerular epithelial cell
3
layer of hippocampus
3
left renal cortex interstitium
3
left renal pelvis
3
limb
3
luminal epithelial cell of mammary gland
3
medulla oblongata
3
mesendoderm
3
midbrain
3
naive T cell
3
naive thymus-derived CD4-positive, alpha-beta T cell
3
neuron
3
neurosphere
3
neutrophil
3
occipital lobe
3
pancreatic polypeptide-secreting cell
3
plasmacytoid dendritic cell
3
pons
3
prostate gland
3
putamen
3
renal cortical epithelial cell
3
right renal cortex interstitium
3
right renal pelvis
3
skeletal muscle tissue
3
superior temporal gyrus
3
thoracic aorta
3
tongue
3
type I muscle cell
3
type I pneumocyte
3
type II muscle cell
3
urinary bladder
2
22Rv1
2
A172
2
ACHN
2
AG04449 cell
2
AG04450 cell
2
AG08396 cell
2
AG09309 cell
2
AG09319 cell
2
AG10803 cell
2
BE(2)-C
Life stage
1
embryonic
Date released
1
June, 2020
1
March, 2020
1
September, 2022
Software used
abc
1
macs
1
nospecificsoft_customcode
1
r
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
biosample_term_name!
mammary gland epithelial cell
mesenchymal stem cell
software_used.software.name!
abc
Showing 3 of 3 results
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Download
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP