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Schema
Citing CMDGA
Clear Filters
Annotation type
10
gene expression
4
accessible chromatin
2
binding sites
2
variant allelic effects
1
caQTL
1
eQTL
1
histone modifications
1
target gene predictions
Annotation Category
4
cis-regulatory elements
2
Genetic variant effects
Annotation type Category
5
snATAC-seq
1
ATAC-seq
Available data
6
bed bed3+
3
bigWig
File set status
6
released
Genome assembly (visualization)
18
hg19
GRCh38
Organism
6
Homo sapiens
Biosample type
6
primary cell
Biosample term
20
pigmented layer of retina
8
EndoC_BH1
7
retinal pigment epithelial cell
6
endothelial cell
5
pancreatic alpha cell
5
pancreatic beta cell
5
pancreatic delta cell
4
pancreatic ductal cell
3
enterocyte
3
glomerular visceral epithelial cell
3
hepatocyte
3
pancreatic acinar cell
3
pancreatic polypeptide-secreting cell
2
aortic endothelial cell
2
capillary endothelial cell
2
choroid plexus epithelial cell
2
endothelial cell of umbilical vein
2
epithelial cell of esophagus
2
glomerular endothelial cell
2
goblet cell
2
kidney glomerular epithelial cell
2
mammary gland epithelial cell
2
renal cortical epithelial cell
2
type II pneumocyte
1
brain microvascular endothelial cell
1
retinal pigment epithelial cell
1
Liver fetal (hepatocyte)
1
breast epithelium
1
bronchial epithelial cell
1
bronchial goblet cell
1
club cell
1
cortical cell of adrenal gland
1
dermis microvascular lymphatic vessel endothelial cell
1
endothelial cell of lymphatic vessel
1
epithelial cell of prostate
1
epithelial cell of proximal tubule
1
esophagus squamous epithelium
1
foreskin keratinocyte
1
glomerular epithelium
1
granulosa cell
1
iris pigment epithelial cell
1
keratinocyte
1
kidney capillary endothelial cell
1
kidney distal convoluted tubule epithelial cell
1
kidney epithelial cell
1
kidney loop of Henle epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
kidney tubule cell
1
luminal epithelial cell of prostatic duct
1
mammary epithelial cell
1
mesothelial cell
1
neuroendocrine cell
1
non-pigmented ciliary epithelial cell
1
pancreatic endothelial cell
1
parietal cell
1
peptic cell
1
pulmonary artery endothelial cell
1
renal cortex tubule
1
renal intercalated cell
1
renal principal cell
1
thyroid follicular cell
1
tracheal epithelial cell
1
type I pneumocyte
1
urothelial cell
Organ
6
epithelium
Life stage
1
adult
1
unknown
Date released
3
February, 2024
1
August, 2021
1
January, 2021
1
May, 2022
Software used
4
macs
2
deltasvm
Lab
2
Bing Ren, UCSD
1
AMP-T2D consortium
1
Katalin Susztak, Upenn
1
Kyle Gaulton, UCSD
1
Stephen Parker, UMich
Project
5
AMP
1
T1D
RFA
3
AMP
2
AMP2
1
T1D
assembly!
GRCh38
Showing 6 of 6 results
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Download
FileSet
DSR897TMQ
released
Annotation file set
: Accessible chromatin from snATAC-seq of endothelial cell from human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR493PXL
released
Annotation file set
: Accessible chromatin from Katalin Susztak 75kidney Project of Endothelial cells
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR264NGG
released
Annotation file set
: Cell type chromatin broad peaks and bw of endothelial cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR035TOY
released
Annotation file set
: Variant allelic effects annotation of Endothelial cells (sub-type2) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR772CSM
released
Annotation file set
: Variant allelic effects annotation of Endothelial cells from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR579LZJ
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of endothelial
Lab:
Kyle Gaulton, UCSD
Project:
T1D