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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
6
chromatin state
6
target gene predictions
5
accessible chromatin
4
candidate regulatory elements
2
gene expression
1
binding sites
1
histone modifications
1
variant allelic effects
Annotation Category
5
cis-regulatory elements
1
Genetic variant effects
Annotation type Category
3
ATAC-seq
2
snATAC-seq
1
DNase-seq
Available data
6
bed bed3+
1
bigWig
File set status
6
released
Genome assembly (visualization)
6
hg19
Organism
6
Homo sapiens
Biosample type
4
in vitro differentiated cells
2
primary cell
Biosample term
24
retina
20
pigmented layer of retina
17
monocyte
11
kidney
10
neural progenitor cell
9
EndoC_BH1
9
hepatocyte
8
fibroblast
8
retinal pigment epithelial cell
7
endothelial cell
7
heart
7
islet of Langerhans
6
SGBS preadipocytes
6
adipocyte
6
embryonic stem cell
6
pancreas
6
pancreatic ductal cell
5
cardiac fibroblast
5
chondrocyte
5
coronary artery
5
heart left ventricle
5
macrophage
5
osteoblast
5
pancreatic beta cell
5
right atrium auricular region
5
smooth muscle cell
5
tibial artery
5
tibial nerve
4
B cell
4
Pancreatic progenitors (progenitor cell of endocrine pancreas)
4
T cell
4
cardiac muscle cell
4
endothelial cell of hepatic sinusoid
4
glomerular visceral epithelial cell
4
glutamatergic neuron
4
liver
4
pancreatic acinar cell
4
pancreatic alpha cell
4
regulatory T cell
4
skeletal muscle fiber
3
CD8-positive, alpha-beta T cell
3
Schwann cell
3
T-helper 1 cell
3
adipose tissue
3
brain
3
brain pericyte
3
caudate nucleus
3
choroid plexus epithelial cell
3
endothelial cell of umbilical vein
3
enterocyte
3
frontal cortex
3
globus pallidus
3
glomerular endothelial cell
3
hepatic stellate cell
3
kidney glomerular epithelial cell
3
medulla oblongata
3
mesenchymal stem cell
3
midbrain
3
myofibroblast cell
3
occipital lobe
3
pancreatic delta cell
3
pancreatic stellate cell
3
pons
3
putamen
3
renal cortical epithelial cell
3
renal pelvis
3
skeletal muscle myoblast
3
stomach
3
subcutaneous adipose tissue
3
superior temporal gyrus
2
hindlimb muscle
2
muscle of leg
2
Ammon's horn
2
HepG2
2
MIN6
2
Rh-4 cell
2
T follicular helper cell
2
T-helper 17 cell
2
T-helper 2 cell
2
acute myeloid leukemia cell
2
adipose-derived stem cell
2
aortic endothelial cell
2
ascending aorta
2
astrocyte of the cerebellum
2
astrocyte of the hippocampus
2
basal cell
2
bone marrow cell
2
central memory CD8-positive, alpha-beta T cell
2
differentiating adipose-derived stem cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
epithelial cell of esophagus
2
epithelial cell of proximal tubule
2
erythroid cell
2
fibroblast of cardiac tissue
2
gamma-delta T cell
2
goblet cell
2
heart right ventricle
2
kidney capillary endothelial cell
2
kidney epithelial cell
2
kidney tubule cell
2
left cardiac atrium
2
left renal cortex interstitium
2
left renal pelvis
2
leukocyte
2
mammary gland epithelial cell
2
mature natural killer cell
2
memory B cell
2
memory T cell
2
memory regulatory T cell
2
middle frontal gyrus
2
muscle of arm
2
muscle of leg
2
naive B cell
2
naive regulatory T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
natural killer cell
2
omental fat pad
2
pancreatic polypeptide-secreting cell
2
renal cortex interstitium
2
right kidney
2
right renal cortex interstitium
2
right renal pelvis
2
skeletal muscle cell
2
skeletal muscle satellite cell
skin fibroblast
2
smooth muscle cell of the brain vasculature
2
spinal cord
2
spleen
2
thoracic aorta
2
type I muscle cell
2
type II muscle cell
2
vascular associated smooth muscle cell
1
brain microvascular endothelial cell
1
left kidney
1
omental fat pad
1
retinal pigment epithelial cell
1
786-O cell
1
A-673 cell
1
A172
1
A549
1
ACHN
1
AG04449 cell
1
AG04450 cell
1
AG08396 cell
1
AG09309 cell
1
AG09319 cell
1
AG10803 cell
1
Adipose SGBS cell line (adipocyte)
1
B-Lymphocytes
1
B-lymphocyte
1
BE(2)-C
1
BJ cell
1
CD1c-positive myeloid dendritic cell
1
CD4-Positive T-Lymphocytes
1
CD4-positive helper T cell
1
CMK
1
COLO-829 cell
1
COLO205
1
Caco-2 cell
1
Caki2
1
D341 Med cell
1
DG-75 cell
1
Daoy
1
ECC-1
1
G-401 cell
1
GM03348
1
GM04503
1
GM04504
1
GM06990
1
GM10248
1
GM10266
1
GM12864
1
GM12865
1
GM12878
1
GM13976
1
GM13977
1
GM18507
1
GM19240
1
GM20000
1
GM23248
1
GP5d
1
Glioblastoma
1
H1-hESC
1
H4
1
H7-hESC
1
HAC cell
1
HAP-1
1
HBMEC cell
1
HCT-116 cell
1
HEK293
1
HGF
1
HL-60
1
HT-29
1
HUES6
1
HUES8
1
HeLa cell
1
Heart fetal (cardiac muscle cell)
1
Hodgkin lymphoma cell line
Organ
6
connective tissue
Date released
3
February, 2024
1
June, 2020
1
November, 2022
1
October, 2019
Software used
5
macs
1
deltasvm
Lab
4
AMP-T2D consortium
1
Bing Ren, UCSD
1
Stephen Parker, UMich
Project
6
AMP
RFA
5
AMP
1
AMP2
1
ENCODE3
biosample_term_name!
skin fibroblast
Showing 6 of 6 results
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Download
FileSet
DSR654XDX
released
Annotation file set
: Open chromatin regions that exhibit differential accessibility in the lipid-challenged adipocytes
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR161NNW
released
Annotation file set
: Accessible chromatin of ATAC-seq in a human cell model of adipocytes day 14
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR083CQX
released
Annotation file set
: Cell type chromatin broad peaks and bw of adipocyte from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR476AJZ
released
Annotation file set
: Variant allelic effects annotation of Adipocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR073DMC
released
Annotation file set
: Accessible chromatin annotation for Adipocyte Adipocytes from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR645XXX
released
Annotation file set
: Adipocyte accessible chromatin annotation of overlapping ATAC-seq sites from 5 samples with most significant peak selected
Lab:
AMP-T2D consortium
Project:
AMP