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Schema
Citing CMDGA
Clear Filters
Annotation type
4
accessible chromatin
4
candidate regulatory elements
3
gene expression
3
target gene predictions
2
binding sites
2
chromatin state
2
differential activity
1
histone modifications
0
variant allelic effects
Annotation Category
4
cis-regulatory elements
Annotation type Category
3
snATAC-seq
1
DNase-seq
Available data
4
bed bed3+
3
bigWig
File set status
4
released
Genome assembly (visualization)
4
hg19
2
GRCh38
Organism
4
Homo sapiens
Biosample type
3
primary cell
1
in vitro differentiated cells
Biosample term
3
endothelial cell of lymphatic vessel
1
dermis microvascular lymphatic vessel endothelial cell
Organ
230
epithelium
104
connective tissue
73
pancreas
66
kidney
59
brain
51
vasculature
41
eye
36
heart
35
blood vessel
34
musculature of body
28
limb
28
liver
24
intestine
16
lung
15
artery
15
bone element
14
skin of body
12
blood
12
bodily fluid
12
embryo
10
adipose tissue
10
large intestine
10
stomach
9
extraembryonic component
8
adrenal gland
8
lymph node
8
mammary gland
8
skeleton
7
ureter
6
esophagus
6
prostate gland
5
gonad
5
nerve
4
bronchus
4
lymphatic vessel
4
placenta
3
penis
3
small intestine
3
thyroid gland
3
uterus
3
vein
2
bone marrow
2
lymphoid tissue
2
ovary
2
spinal cord
2
spleen
2
testis
2
thymus
1
breast
1
mouth
1
nose
1
tongue
1
trachea
1
urinary bladder
Date released
2
November, 2021
1
April, 2020
1
June, 2020
Software used
3
macs
Lab
2
Bing Ren, UCSD
1
AMP-T2D consortium
1
Xin Sun, UCSD
Project
2
ENCODE
1
AMP
1
LungMap
RFA
2
ENCODE3
1
AMP
1
LungMap2
biosample_term_name!
pigmented layer of retina
files.file_type!
bam
Showing 4 of 4 results
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Download
FileSet
DSR165PFW
released
Annotation file set
: ATAC-seq peaks in lymphatic endothelial cells from lung snATAC-seq
Lab:
Xin Sun, UCSD
Project:
LungMap
FileSet
DSR427DYD
released
Annotation file set
: Accessible chromatin annotation of Lymphatic Endothelial Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR093JYI
released
Annotation file set
: Accessible chromatin annotation of Fetal Lymphatic Endothelial Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR841NUD
released
Annotation file set
: Accessible chromatin annotation for Cardiovascular HMVEC from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP