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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
6
chromatin state
6
target gene predictions
5
accessible chromatin
4
candidate regulatory elements
1
binding sites
1
gene expression
1
histone modifications
0
variant allelic effects
Annotation Category
5
cis-regulatory elements
Annotation type Category
2
ATAC-seq
2
DNase-seq
1
snATAC-seq
Available data
5
bed bed3+
2
bigWig
File set status
5
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
3
in vitro differentiated cells
2
primary cell
Biosample term
24
retina
19
pigmented layer of retina
18
monocyte
16
fibroblast
14
endothelial cell
13
excitatory neuron
13
macrophage
11
kidney
10
neural progenitor cell
10
pericyte cell
9
EndoC_BH1
9
retinal pigment epithelial cell
8
B cell
8
astrocyte
8
islet of Langerhans
8
smooth muscle cell
7
T cell
7
heart
7
pancreatic alpha cell
7
pancreatic beta cell
6
SGBS preadipocytes
6
embryonic stem cell
6
glutamatergic neuron
6
pancreas
5
cardiac fibroblast
5
CD8-positive, alpha-beta T cell
5
chondrocyte
5
coronary artery
5
erythroblast
5
heart left ventricle
5
inhibitory neuron
5
osteoblast
5
pancreatic acinar cell
5
pancreatic ductal cell
5
regulatory T cell
5
right atrium auricular region
5
tibial artery
5
tibial nerve
4
Pancreatic progenitors (progenitor cell of endocrine pancreas)
4
adipocyte
4
fibroblast of cardiac tissue
4
glomerular visceral epithelial cell
4
hepatic stellate cell
4
hepatocyte
4
liver
4
memory B cell
4
natural killer cell
4
pancreatic delta cell
4
skeletal muscle satellite cell
4
type II pneumocyte
3
T-helper 1 cell
3
adipose tissue
3
brain
3
brain pericyte
3
cardiac muscle cell
3
caudate nucleus
3
choroid plexus epithelial cell
colon epithelial cell
3
cortical cell of adrenal gland
3
endothelial cell of lymphatic vessel
3
endothelial cell of umbilical vein
3
enterocyte
3
frontal cortex
3
gabaergic neuron
3
globus pallidus
3
glomerular endothelial cell
3
kidney glomerular epithelial cell
3
medulla oblongata
3
midbrain
3
naive B cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
occipital lobe
3
pons
3
putamen
3
renal cortical epithelial cell
3
renal pelvis
3
skeletal muscle fiber
3
skeletal muscle myoblast
3
skin fibroblast
3
stomach
3
subcutaneous adipose tissue
3
superior temporal gyrus
3
type I pneumocyte
2
hindlimb muscle
2
muscle of leg
2
Ammon's horn
2
HepG2
2
MIN6
2
Muller cell
2
Rh-4 cell
2
T follicular helper cell
2
T-helper 17 cell
2
T-helper 2 cell
2
acute myeloid leukemia cell
2
aortic endothelial cell
2
ascending aorta
2
astrocyte of the cerebellum
2
astrocyte of the hippocampus
2
basal cell
2
blood vessel smooth muscle cell
2
bone marrow cell
2
capillary endothelial cell
2
central memory CD8-positive, alpha-beta T cell
2
ciliated cell
2
club cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
endocardial cell
2
endothelial cell of hepatic sinusoid
2
enteric neuron
2
enteric smooth muscle cell
2
epithelial cell of proximal tubule
2
erythroid cell
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
gamma-delta T cell
2
heart right ventricle
2
keratinocyte
2
kidney capillary endothelial cell
2
kidney epithelial cell
2
kidney tubule cell
2
left cardiac atrium
2
left renal cortex interstitium
2
left renal pelvis
2
luminal epithelial cell of mammary gland
2
mammary gland epithelial cell
2
mature natural killer cell
2
megakaryocyte
2
memory T cell
2
memory regulatory T cell
2
mesangial cell
2
mesenchymal stem cell
2
mesothelial cell
2
middle frontal gyrus
2
muscle of arm
2
muscle of leg
2
naive regulatory T cell
2
naive t cell
2
neuron
2
oligodendrocyte
2
oligodendrocyte precursor cell
2
omental fat pad
2
pancreatic stellate cell
2
plasma cell
2
plasmacytoid dendritic cell
2
renal cortex interstitium
2
right kidney
2
right renal cortex interstitium
2
right renal pelvis
2
schwann cell
2
skeletal muscle cell
2
smooth muscle cell of the brain vasculature
2
smooth muscle cell of the esophagus
2
spinal cord
2
spleen
2
thoracic aorta
2
type I muscle cell
2
type II muscle cell
1
brain microvascular endothelial cell
1
left kidney
1
omental fat pad
1
retinal pigment epithelial cell
1
786-O cell
1
A-673 cell
1
A172
1
A549
1
ACHN
1
AG04449 cell
1
AG04450 cell
1
AG08396 cell
1
AG09309 cell
1
AG09319 cell
1
AG10803 cell
1
Adipose SGBS cell line (adipocyte)
1
B-Lymphocytes
1
B-lymphocyte
1
BE(2)-C
1
BJ cell
1
CD1c-positive myeloid dendritic cell
1
CD4-Positive T-Lymphocytes
1
CD4-positive helper T cell
1
CD4-positive, alpha-beta T cell
1
CMK
1
COLO-829 cell
1
COLO205
1
Caco-2 cell
1
Caki2
1
D341 Med cell
1
DG-75 cell
1
Daoy
1
ECC-1
1
G-401 cell
1
GM03348
1
GM04503
1
GM04504
1
GM06990
1
GM10248
1
GM10266
1
GM12864
Organ
4
connective tissue
Date released
February, 2024
2
June, 2020
1
November, 2021
1
November, 2022
1
October, 2019
Software used
5
macs
Lab
4
AMP-T2D consortium
1
Bing Ren, UCSD
Project
4
AMP
1
ENCODE
RFA
4
AMP
1
ENCODE3
biosample_term_name!
colon epithelial cell
month_released!
February, 2024
Showing 5 of 5 results
table-tab-icon
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Download
FileSet
DSR161NNW
released
Annotation file set
: Accessible chromatin of ATAC-seq in a human cell model of adipocytes day 14
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR987PCG
released
Annotation file set
: Accessible chromatin annotation of Adipocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR034GOY
released
Annotation file set
: Accessible chromatin annotation for Blood B-Lymphocytes from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR073DMC
released
Annotation file set
: Accessible chromatin annotation for Adipocyte Adipocytes from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR645XXX
released
Annotation file set
: Adipocyte accessible chromatin annotation of overlapping ATAC-seq sites from 5 samples with most significant peak selected
Lab:
AMP-T2D consortium
Project:
AMP