Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
8
candidate regulatory elements
8
chromatin state
8
target gene predictions
5
accessible chromatin
3
binding sites
2
gene expression
1
histone modifications
1
variant allelic effects
Annotation Category
5
cis-regulatory elements
1
Genetic variant effects
Annotation type Category
3
ATAC-seq
3
snATAC-seq
Available data
6
bed bed3+
2
bigWig
File set status
6
released
Genome assembly (visualization)
6
hg19
1
GRCh38
Organism
6
Homo sapiens
Biosample type
3
in vitro differentiated cells
3
primary cell
Biosample term
23
retina
22
fibroblast
20
pigmented layer of retina
18
endothelial cell
16
monocyte
15
macrophage
13
excitatory neuron
11
smooth muscle cell
10
kidney
10
neural progenitor cell
10
pericyte cell
9
EndoC_BH1
9
hepatocyte
9
pancreatic beta cell
8
T cell
8
astrocyte
8
pancreatic acinar cell
8
pancreatic alpha cell
8
pancreatic ductal cell
8
retinal pigment epithelial cell
7
islet of Langerhans
7
skeletal muscle fiber
6
B cell
6
adipocyte
6
embryonic stem cell
6
endothelial cell of hepatic sinusoid
6
enterocyte
6
glutamatergic neuron
6
pancreatic delta cell
5
cardiac fibroblast
5
SGBS preadipocytes
5
chondrocyte
5
coronary artery
5
erythroblast
5
heart
5
heart left ventricle
5
inhibitory neuron
5
skeletal muscle satellite cell
5
type II pneumocyte
4
CD8-positive, alpha-beta T cell
4
Pancreatic progenitors (progenitor cell of endocrine pancreas)
4
basal cell
4
cardiac muscle cell
4
cortical cell of adrenal gland
4
memory B cell
4
myofibroblast cell
4
pancreas
4
pancreatic stellate cell
4
right atrium auricular region
4
tibial artery
4
tibial nerve
3
Schwann cell
3
adipose tissue
3
colon epithelial cell
3
endothelial cell of lymphatic vessel
3
gabaergic neuron
3
glomerular visceral epithelial cell
3
goblet cell
3
hepatic stellate cell
3
keratinocyte
3
liver
3
mesothelial cell
3
naive B cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
natural killer cell
3
osteoblast
3
pancreatic polypeptide-secreting cell
3
regulatory T cell
3
subcutaneous adipose tissue
3
type I muscle cell
3
type I pneumocyte
3
type II muscle cell
2
hindlimb muscle
2
muscle of leg
2
MIN6
2
Muller cell
2
T follicular helper cell
2
T-helper 1 cell
2
T-helper 17 cell
2
T-helper 2 cell
2
adipose-derived stem cell
2
aortic endothelial cell
2
ascending aorta
2
astrocyte of the cerebellum
2
astrocyte of the hippocampus
2
blood vessel smooth muscle cell
2
brain
2
brain pericyte
2
capillary endothelial cell
2
caudate nucleus
2
central memory CD8-positive, alpha-beta T cell
2
choroid plexus epithelial cell
2
ciliated cell
2
club cell
2
differentiating adipose-derived stem cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
endocardial cell
2
endothelial cell of umbilical vein
2
enteric neuron
2
enteric smooth muscle cell
2
epithelial cell of esophagus
2
epithelial cell of proximal tubule
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
fibroblast of cardiac tissue
2
frontal cortex
2
gamma-delta T cell
2
glial cell
2
globus pallidus
2
glomerular endothelial cell
2
heart right ventricle
2
kidney capillary endothelial cell
2
kidney epithelial cell
2
kidney glomerular epithelial cell
2
left cardiac atrium
2
left renal cortex interstitium
2
left renal pelvis
2
leukocyte
2
luminal epithelial cell of mammary gland
2
mammary gland epithelial cell
2
mast cell
2
mature natural killer cell
2
medulla oblongata
2
megakaryocyte
2
memory T cell
2
memory regulatory T cell
2
mesangial cell
2
mesenchymal stem cell
2
midbrain
2
middle frontal gyrus
2
muscle of arm
2
naive regulatory T cell
2
naive t cell
2
neuron
2
occipital lobe
2
oligodendrocyte
2
oligodendrocyte precursor cell
2
omental fat pad
2
parietal cell
2
peptic cell
2
plasma cell
2
plasmacytoid dendritic cell
2
pons
2
putamen
2
renal cortex interstitium
2
renal cortical epithelial cell
2
renal pelvis
2
right kidney
2
right renal cortex interstitium
2
right renal pelvis
2
schwann cell
2
skeletal muscle cell
2
skeletal muscle myoblast
2
smooth muscle cell of the brain vasculature
2
smooth muscle cell of the esophagus
2
superior temporal gyrus
2
thoracic aorta
2
thyroid follicular cell
2
vascular associated smooth muscle cell
1
brain microvascular endothelial cell
1
left kidney
1
omental fat pad
1
retinal pigment epithelial cell
1
Adipose SGBS cell line (adipocyte)
1
Ammon's horn
1
CD4-positive helper T cell
1
CD4-positive, alpha-beta T cell
1
Heart fetal (cardiac muscle cell)
1
HepG2
1
Liver fetal (hepatocyte)
1
Preadipose SGBS cell line (adipocyte)
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
Satellite Cells, Skeletal Muscle
1
activated CD4-positive, alpha-beta T cell
1
activated CD8-positive, alpha-beta T cell
1
alveolar macrophage
1
basal cell of epidermis
1
body of pancreas
1
brain microvascular endothelial cell
1
bronchial goblet cell
1
cardiac endothelial cell
1
cardiac precursors
1
cardiac precursors (cardiac muscle cell)
1
cardiomyocytes (cardiac muscle cell)
1
cerebellar cortex
1
cerebellum
1
cerebellum (Hemisphere)
1
cholangiocyte
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
1
colon goblet cell
1
conventional dendritic cell
1
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
eccrine cell
1
endothelial cell of artery
Organ
6
connective tissue
Date released
3
February, 2024
June, 2020
1
November, 2021
1
November, 2022
1
October, 2019
Software used
5
macs
1
deltasvm
Lab
3
AMP-T2D consortium
2
Bing Ren, UCSD
1
Stephen Parker, UMich
Project
5
AMP
1
ENCODE
RFA
4
AMP
1
AMP2
1
ENCODE3
month_released!
June, 2020
Showing 6 of 6 results
table-tab-icon
matrix-icon
Download
FileSet
DSR654XDX
released
Annotation file set
: Open chromatin regions that exhibit differential accessibility in the lipid-challenged adipocytes
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR161NNW
released
Annotation file set
: Accessible chromatin of ATAC-seq in a human cell model of adipocytes day 14
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR987PCG
released
Annotation file set
: Accessible chromatin annotation of Adipocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR083CQX
released
Annotation file set
: Cell type chromatin broad peaks and bw of adipocyte from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR476AJZ
released
Annotation file set
: Variant allelic effects annotation of Adipocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR645XXX
released
Annotation file set
: Adipocyte accessible chromatin annotation of overlapping ATAC-seq sites from 5 samples with most significant peak selected
Lab:
AMP-T2D consortium
Project:
AMP