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Schema
Citing CMDGA
Clear Filters
Annotation type
11
candidate regulatory elements
6
chromatin state
6
eQTL
6
target gene predictions
5
gene expression
3
Fine-mapped variants
3
binding sites
2
accessible chromatin
2
histone modifications
1
differential activity
1
variant allelic effects
Annotation Category
2
cis-regulatory elements
1
Genetic variant effects
Annotation type Category
2
ATAC-seq
1
DNase-seq
Available data
3
bed bed3+
1
bigWig
File set status
3
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
2
tissue
1
cell line
Biosample term
23
retina
22
fibroblast
20
pigmented layer of retina
18
endothelial cell
18
monocyte
16
macrophage
13
excitatory neuron
11
smooth muscle cell
10
neural progenitor cell
10
pericyte cell
9
EndoC_BH1
9
T cell
9
hepatocyte
9
kidney
9
pancreatic beta cell
9
pancreatic ductal cell
8
B cell
8
astrocyte
8
islet of Langerhans
8
pancreatic acinar cell
8
pancreatic alpha cell
8
retinal pigment epithelial cell
7
adipocyte
7
skeletal muscle fiber
6
embryonic stem cell
6
endothelial cell of hepatic sinusoid
enterocyte
6
glutamatergic neuron
6
pancreatic delta cell
5
CD8-positive, alpha-beta T cell
5
chondrocyte
5
erythroblast
5
heart
5
inhibitory neuron
5
osteoblast
5
regulatory T cell
5
skeletal muscle satellite cell
5
type II pneumocyte
4
Pancreatic progenitors (progenitor cell of endocrine pancreas)
4
SGBS preadipocytes
4
basal cell
4
coronary artery
4
cortical cell of adrenal gland
4
fibroblast of cardiac tissue
4
liver
4
memory B cell
4
myofibroblast cell
4
natural killer cell
4
pancreas
4
pancreatic stellate cell
4
right atrium auricular region
4
tibial artery
4
tibial nerve
3
Schwann cell
3
T-helper 1 cell
3
colon epithelial cell
3
endothelial cell of lymphatic vessel
3
endothelial cell of umbilical vein
3
gabaergic neuron
3
glomerular visceral epithelial cell
3
goblet cell
3
heart left ventricle
3
hepatic stellate cell
3
keratinocyte
3
mammary gland epithelial cell
3
medulla oblongata
3
mesenchymal stem cell
3
mesothelial cell
3
midbrain
3
naive B cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
pancreatic polypeptide-secreting cell
3
skeletal muscle myoblast
3
skin fibroblast
3
stomach
3
type I muscle cell
3
type I pneumocyte
3
type II muscle cell
2
cardiac fibroblast
2
muscle of leg
2
CD4-positive helper T cell
2
HepG2
2
MIN6
2
Muller cell
2
Rh-4 cell
2
T follicular helper cell
2
T-helper 17 cell
2
T-helper 2 cell
2
acute myeloid leukemia cell
2
adipose tissue
2
adipose-derived stem cell
2
aortic endothelial cell
2
blood vessel smooth muscle cell
2
bone marrow cell
2
brain
2
brain pericyte
2
capillary endothelial cell
2
cardiac muscle cell
2
caudate nucleus
2
central memory CD8-positive, alpha-beta T cell
2
choroid plexus epithelial cell
2
ciliated cell
2
club cell
2
differentiating adipose-derived stem cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
endocardial cell
2
enteric neuron
2
enteric smooth muscle cell
2
epithelial cell of esophagus
2
erythroid cell
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
frontal cortex
2
gamma-delta T cell
2
glial cell
2
globus pallidus
2
glomerular endothelial cell
2
kidney glomerular epithelial cell
2
left renal cortex interstitium
2
leukocyte
2
luminal epithelial cell of mammary gland
2
mast cell
2
mature natural killer cell
2
megakaryocyte
2
memory T cell
2
memory regulatory T cell
2
mesangial cell
2
naive regulatory T cell
2
naive t cell
2
neuron
2
occipital lobe
2
oligodendrocyte
2
oligodendrocyte precursor cell
2
parietal cell
2
peptic cell
2
plasma cell
2
plasmacytoid dendritic cell
2
pons
2
putamen
2
renal cortical epithelial cell
2
renal pelvis
2
right kidney
2
right renal cortex interstitium
2
schwann cell
2
smooth muscle cell of the esophagus
2
spinal cord
2
spleen
2
subcutaneous adipose tissue
2
superior temporal gyrus
2
thoracic aorta
2
thyroid follicular cell
2
vascular associated smooth muscle cell
1
brain microvascular endothelial cell
1
hindlimb muscle
1
left kidney
1
omental fat pad
1
retinal pigment epithelial cell
1
786-O cell
1
A-673 cell
1
A172
1
A549
1
ACHN
1
AG04449 cell
1
AG04450 cell
1
AG08396 cell
1
AG09309 cell
1
AG09319 cell
1
AG10803 cell
1
Adipose SGBS cell line (adipocyte)
1
Ammon's horn
1
B-Lymphocytes
1
B-lymphocyte
1
BE(2)-C
1
BJ cell
1
CD1c-positive myeloid dendritic cell
1
CD4-Positive T-Lymphocytes
1
CD4-positive, alpha-beta T cell
1
CMK
1
COLO-829 cell
1
COLO205
1
Caco-2 cell
1
Caki2
1
D341 Med cell
1
DG-75 cell
1
Daoy
1
ECC-1
1
G-401 cell
1
GM03348
1
GM04503
1
GM04504
1
GM06990
1
GM10248
1
GM10266
1
GM12864
1
GM12865
1
GM12878
1
GM13976
1
GM13977
Organ
2
adipose tissue
2
connective tissue
1
mammary gland
Life stage
1
adult
Date released
January, 2020
1
June, 2020
1
May, 2020
1
September, 2018
Software used
2
macs
1
deltasvm
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
biosample_term_name!
enterocyte
month_released!
January, 2020
Showing 3 of 3 results
table-tab-icon
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Download
FileSet
DSR645VUL
released
Annotation file set
: Accessible chromatin annotation for Breast MCF-7 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR802UOO
released
Annotation file set
: Genetic variants with deltaSVM predictions in adipose white tissue ATAC-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR978YHK
released
Annotation file set
: ATAC-seq sites in subcutaneous adipose tissue for 1 sample from ENCODE
Lab:
AMP-T2D consortium
Project:
AMP