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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
29
candidate regulatory elements
18
chromatin state
16
target gene predictions
3
histone modifications
2
accessible chromatin
2
eQTL
1
binding sites
1
gene expression
1
variant allelic effects
Annotation Category
2
cis-regulatory elements
1
Genetic variant effects
Annotation type Category
3
DNase-seq
Available data
3
bed bed3+
1
bigWig
File set status
3
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
3
tissue
Biosample term
24
retina
22
fibroblast
20
pigmented layer of retina
18
endothelial cell
18
monocyte
16
macrophage
13
excitatory neuron
11
smooth muscle cell
10
hepatocyte
10
neural progenitor cell
10
pericyte cell
9
EndoC_BH1
9
T cell
9
pancreatic beta cell
9
pancreatic ductal cell
9
retinal pigment epithelial cell
8
B cell
8
astrocyte
8
islet of Langerhans
8
pancreatic acinar cell
8
pancreatic alpha cell
7
adipocyte
7
heart
7
skeletal muscle fiber
6
SGBS preadipocytes
6
embryonic stem cell
6
endothelial cell of hepatic sinusoid
6
enterocyte
6
glutamatergic neuron
6
pancreas
6
pancreatic delta cell
5
cardiac fibroblast
5
CD8-positive, alpha-beta T cell
chondrocyte
5
coronary artery
5
erythroblast
5
heart left ventricle
5
inhibitory neuron
5
osteoblast
5
regulatory T cell
5
right atrium auricular region
5
skeletal muscle satellite cell
5
tibial artery
5
tibial nerve
5
type II pneumocyte
4
Pancreatic progenitors (progenitor cell of endocrine pancreas)
4
basal cell
4
cardiac muscle cell
4
cortical cell of adrenal gland
4
fibroblast of cardiac tissue
4
hepatic stellate cell
4
liver
4
memory B cell
4
myofibroblast cell
4
natural killer cell
4
pancreatic stellate cell
3
Schwann cell
3
T-helper 1 cell
3
adipose tissue
3
brain
3
brain pericyte
3
caudate nucleus
3
choroid plexus epithelial cell
3
colon epithelial cell
3
endothelial cell of lymphatic vessel
3
endothelial cell of umbilical vein
3
frontal cortex
3
gabaergic neuron
3
globus pallidus
3
goblet cell
3
keratinocyte
3
mammary gland epithelial cell
3
medulla oblongata
3
mesenchymal stem cell
3
mesothelial cell
3
midbrain
3
naive B cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
occipital lobe
3
pancreatic polypeptide-secreting cell
3
pons
3
putamen
3
skeletal muscle myoblast
3
skin fibroblast
3
stomach
3
subcutaneous adipose tissue
3
superior temporal gyrus
3
type I muscle cell
3
type I pneumocyte
3
type II muscle cell
2
hindlimb muscle
2
muscle of leg
2
Ammon's horn
2
CD4-positive helper T cell
2
HepG2
2
MIN6
2
Muller cell
2
Rh-4 cell
2
T follicular helper cell
2
T-helper 17 cell
2
T-helper 2 cell
2
acute myeloid leukemia cell
2
adipose-derived stem cell
2
aortic endothelial cell
2
ascending aorta
2
astrocyte of the cerebellum
2
astrocyte of the hippocampus
2
blood vessel smooth muscle cell
2
bone marrow cell
2
capillary endothelial cell
2
central memory CD8-positive, alpha-beta T cell
2
ciliated cell
2
club cell
2
differentiating adipose-derived stem cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
endocardial cell
2
enteric neuron
2
enteric smooth muscle cell
2
epithelial cell of esophagus
2
erythroid cell
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
gamma-delta T cell
2
glial cell
2
heart right ventricle
2
left cardiac atrium
2
leukocyte
2
luminal epithelial cell of mammary gland
2
mast cell
2
mature natural killer cell
2
megakaryocyte
2
memory T cell
2
memory regulatory T cell
2
mesangial cell
2
middle frontal gyrus
2
muscle of arm
2
muscle of leg
2
naive regulatory T cell
2
naive t cell
2
neuron
2
oligodendrocyte
2
oligodendrocyte precursor cell
2
omental fat pad
2
parietal cell
2
peptic cell
2
plasma cell
2
plasmacytoid dendritic cell
2
schwann cell
2
skeletal muscle cell
2
smooth muscle cell of the brain vasculature
2
smooth muscle cell of the esophagus
2
spinal cord
2
spleen
2
thoracic aorta
2
thyroid follicular cell
2
vascular associated smooth muscle cell
1
brain microvascular endothelial cell
1
omental fat pad
1
retinal pigment epithelial cell
1
786-O cell
1
A-673 cell
1
A172
1
A549
1
AG04449 cell
1
AG04450 cell
1
AG08396 cell
1
AG09309 cell
1
AG09319 cell
1
AG10803 cell
1
Adipose SGBS cell line (adipocyte)
1
B-Lymphocytes
1
B-lymphocyte
1
BE(2)-C
1
BJ cell
1
CD1c-positive myeloid dendritic cell
1
CD4-Positive T-Lymphocytes
1
CD4-positive, alpha-beta T cell
1
CMK
1
COLO-829 cell
1
COLO205
1
Caco-2 cell
1
D341 Med cell
1
DG-75 cell
1
Daoy
1
ECC-1
1
G-401 cell
1
GM03348
1
GM04503
1
GM04504
1
GM06990
1
GM10248
1
GM10266
1
GM12864
1
GM12865
1
GM12878
1
GM13976
1
GM13977
1
GM18507
Organ
3
brain
Life stage
1
fetal
Date released
1
January, 2020
1
June, 2020
1
May, 2020
Software used
2
macs
1
deltasvm
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
biosample_term_name!
chondrocyte
organ_slims!
kidney
prostate gland
Showing 3 of 3 results
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Download
FileSet
DSR147QJJ
released
Annotation file set
: Accessible chromatin annotation for Neural Fetal brain from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR154FEP
released
Annotation file set
: Genetic variants with deltaSVM predictions in brain DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR271FEH
released
Annotation file set
: Accessible chromatin annotation of brain fetal from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP