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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
37
candidate regulatory elements
21
chromatin state
20
target gene predictions
3
accessible chromatin
3
gene expression
2
variant allelic effects
1
binding sites
1
histone modifications
Annotation Category
3
cis-regulatory elements
2
Genetic variant effects
Annotation type Category
4
DNase-seq
1
ATAC-seq
Available data
5
bed bed3+
1
bigWig
File set status
5
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
5
tissue
Biosample term
23
retina
22
fibroblast
20
pigmented layer of retina
17
endothelial cell
17
monocyte
15
macrophage
13
excitatory neuron
11
smooth muscle cell
10
neural progenitor cell
10
pericyte cell
9
EndoC_BH1
9
T cell
9
hepatocyte
9
kidney
8
B cell
8
astrocyte
8
islet of Langerhans
8
pancreatic ductal cell
8
retinal pigment epithelial cell
7
adipocyte
7
pancreatic acinar cell
7
pancreatic beta cell
7
skeletal muscle fiber
6
embryonic stem cell
6
endothelial cell of hepatic sinusoid
6
enterocyte
6
glutamatergic neuron
6
pancreatic alpha cell
5
chondrocyte
5
erythroblast
5
heart
5
inhibitory neuron
5
osteoblast
5
skeletal muscle satellite cell
5
type II pneumocyte
4
CD8-positive, alpha-beta T cell
4
Pancreatic progenitors (progenitor cell of endocrine pancreas)
4
SGBS preadipocytes
4
basal cell
4
coronary artery
4
cortical cell of adrenal gland
4
fibroblast of cardiac tissue
4
liver
4
myofibroblast cell
4
pancreas
4
pancreatic delta cell
4
regulatory T cell
4
right atrium auricular region
4
tibial artery
4
tibial nerve
3
Schwann cell
3
T-helper 1 cell
3
colon epithelial cell
3
endothelial cell of lymphatic vessel
3
endothelial cell of umbilical vein
3
gabaergic neuron
3
glomerular visceral epithelial cell
3
goblet cell
3
heart left ventricle
3
hepatic stellate cell
3
keratinocyte
3
mammary gland epithelial cell
3
medulla oblongata
3
memory B cell
3
mesenchymal stem cell
3
mesothelial cell
3
midbrain
3
natural killer cell
3
pancreatic stellate cell
3
skeletal muscle myoblast
3
skin fibroblast
3
stomach
3
type I muscle cell
3
type I pneumocyte
3
type II muscle cell
2
cardiac fibroblast
2
muscle of leg
2
CD4-positive helper T cell
2
HepG2
2
MIN6
2
Muller cell
2
Rh-4 cell
2
T follicular helper cell
2
T-helper 17 cell
2
T-helper 2 cell
2
acute myeloid leukemia cell
2
adipose tissue
2
adipose-derived stem cell
2
aortic endothelial cell
2
blood vessel smooth muscle cell
2
bone marrow cell
2
brain
2
brain pericyte
2
capillary endothelial cell
2
cardiac muscle cell
2
caudate nucleus
2
central memory CD8-positive, alpha-beta T cell
2
choroid plexus epithelial cell
2
ciliated cell
2
club cell
2
differentiating adipose-derived stem cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
endocardial cell
2
enteric neuron
2
enteric smooth muscle cell
2
epithelial cell of esophagus
2
erythroid cell
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
frontal cortex
2
gamma-delta T cell
2
glial cell
2
globus pallidus
2
glomerular endothelial cell
2
kidney glomerular epithelial cell
2
left renal cortex interstitium
2
leukocyte
2
luminal epithelial cell of mammary gland
2
mast cell
2
mature natural killer cell
2
memory T cell
2
memory regulatory T cell
2
mesangial cell
2
naive B cell
2
naive regulatory T cell
2
naive t cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
neuron
2
occipital lobe
2
oligodendrocyte
2
oligodendrocyte precursor cell
2
pancreatic polypeptide-secreting cell
2
parietal cell
2
peptic cell
2
plasma cell
2
pons
2
putamen
2
renal cortical epithelial cell
2
renal pelvis
2
right kidney
2
right renal cortex interstitium
2
schwann cell
2
smooth muscle cell of the esophagus
2
spinal cord
2
spleen
2
subcutaneous adipose tissue
2
superior temporal gyrus
2
thoracic aorta
2
thyroid follicular cell
2
vascular associated smooth muscle cell
1
brain microvascular endothelial cell
1
hindlimb muscle
1
left kidney
1
omental fat pad
1
retinal pigment epithelial cell
1
786-O cell
1
A-673 cell
1
A172
1
A549
1
ACHN
1
AG04449 cell
1
AG04450 cell
1
AG08396 cell
1
AG09309 cell
1
AG09319 cell
1
AG10803 cell
1
Adipose SGBS cell line (adipocyte)
1
Ammon's horn
1
B-Lymphocytes
1
B-lymphocyte
1
BE(2)-C
1
BJ cell
1
CD1c-positive myeloid dendritic cell
1
CD4-Positive T-Lymphocytes
1
CD4-positive, alpha-beta T cell
1
CMK
1
COLO-829 cell
1
COLO205
1
Caco-2 cell
1
Caki2
1
D341 Med cell
1
DG-75 cell
1
Daoy
1
ECC-1
1
G-401 cell
1
GM03348
1
GM04503
1
GM04504
1
GM06990
1
GM10248
1
GM10266
1
GM12864
1
GM12865
1
GM12878
1
GM13976
1
GM13977
1
GM18507
1
GM19240
Organ
5
heart
Life stage
1
embryonic
1
fetal
Date released
January, 2020
2
June, 2020
2
May, 2020
1
November, 2019
Software used
3
macs
2
deltasvm
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
month_released!
January, 2020
January, 2021
Showing 5 of 5 results
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Download
FileSet
DSR405HBQ
released
Annotation file set
: Accessible chromatin annotation for Cardiovascular Heart from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR763PMQ
released
Annotation file set
: Accessible chromatin annotation for Adipocyte Fetal Heart from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR480PRT
released
Annotation file set
: Genetic variants with deltaSVM predictions in heart child DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR799HGW
released
Annotation file set
: Genetic variants with deltaSVM predictions in heart DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR351NUN
released
Annotation file set
: Accessible chromatin annotation of heart
Lab:
AMP-T2D consortium
Project:
AMP