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Citing CMDGA
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Annotation type
1
accessible chromatin
1
candidate regulatory elements
1
chromatin state
1
target gene predictions
1
variant allelic effects
Annotation Category
1
Genetic variant effects
1
cis-regulatory elements
Annotation type Category
2
DNase-seq
Available data
1
bed bed3+
1
bigWig
File set status
2
released
Genome assembly (visualization)
1
GRCh38
1
hg19
Organism
2
Homo sapiens
Biosample type
2
primary cell
Biosample term
11
kidney
4
glomerular visceral epithelial cell
3
glomerular endothelial cell
3
kidney glomerular epithelial cell
3
renal cortical epithelial cell
3
renal pelvis
2
epithelial cell of proximal tubule
2
kidney capillary endothelial cell
2
kidney epithelial cell
2
kidney tubule cell
2
left renal cortex interstitium
2
left renal pelvis
2
renal cortex interstitium
2
right kidney
2
right renal cortex interstitium
2
right renal pelvis
1
left kidney
1
ACHN
1
Caki2
1
HEK293
1
RCC 7860
1
cortex of kidney
1
glomerular epithelium
1
kidney distal convoluted tubule epithelial cell
1
kidney interstitial cell
1
kidney loop of Henle epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
metanephros
1
parietal epithelial cell
1
renal cell carcinoma
1
renal cortex tubule
1
renal intercalated cell
1
renal principal cell
1
ureteric bud
Organ
2
blood vessel
2
epithelium
2
kidney
2
vasculature
Life stage
1
embryonic
1
fetal
Date released
1
January, 2020
1
May, 2020
Software used
1
deltasvm
1
macs
Lab
2
AMP-T2D consortium
Project
2
AMP
RFA
2
AMP
Showing 2 of 2 results
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Download
FileSet
DSR528XCA
released
Annotation file set
: Variant allelic effects of kidney capillary endothelial cell ENCODE DHSseq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR479BAK
released
Annotation file set
: Accessible chromatin annotation of kidney capillary endothelial cell from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP