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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
1
binding sites
1
candidate regulatory elements
1
chromatin state
1
histone modifications
1
target gene predictions
1
variant allelic effects
Annotation Category
2
cis-regulatory elements
1
Genetic variant effects
Annotation type Category
3
DNase-seq
Available data
2
bed bed3+
1
bigWig
File set status
3
released
Genome assembly (visualization)
2
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
3
tissue
Biosample term
24
retina
22
fibroblast
20
pigmented layer of retina
18
endothelial cell
18
monocyte
16
macrophage
12
excitatory neuron
11
kidney
11
smooth muscle cell
10
hepatocyte
10
pericyte cell
9
EndoC_BH1
9
pancreatic beta cell
pancreatic ductal cell
8
T cell
8
astrocyte
8
islet of Langerhans
8
pancreatic acinar cell
8
pancreatic alpha cell
7
heart
7
skeletal muscle fiber
6
B cell
6
endothelial cell of hepatic sinusoid
6
enterocyte
6
glutamatergic neuron
6
pancreas
6
pancreatic delta cell
5
cardiac fibroblast
5
coronary artery
5
erythroblast
5
heart left ventricle
5
inhibitory neuron
5
osteoblast
5
regulatory T cell
5
right atrium auricular region
5
skeletal muscle satellite cell
5
tibial artery
5
tibial nerve
5
type II pneumocyte
4
CD8-positive, alpha-beta T cell
4
basal cell
4
cortical cell of adrenal gland
4
fibroblast of cardiac tissue
4
glomerular visceral epithelial cell
4
hepatic stellate cell
4
liver
4
memory B cell
4
myofibroblast cell
4
pancreatic stellate cell
3
Schwann cell
3
T-helper 1 cell
3
adipocyte
3
adipose tissue
3
brain
3
brain pericyte
3
cardiac muscle cell
3
caudate nucleus
3
choroid plexus epithelial cell
3
colon epithelial cell
3
endothelial cell of lymphatic vessel
3
endothelial cell of umbilical vein
3
frontal cortex
3
gabaergic neuron
3
globus pallidus
3
glomerular endothelial cell
3
goblet cell
3
keratinocyte
3
kidney glomerular epithelial cell
3
medulla oblongata
3
mesothelial cell
3
midbrain
3
naive B cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
natural killer cell
3
occipital lobe
3
pancreatic polypeptide-secreting cell
3
pons
3
putamen
3
renal cortical epithelial cell
3
renal pelvis
3
retinal pigment epithelial cell
3
skeletal muscle myoblast
3
stomach
3
subcutaneous adipose tissue
3
superior temporal gyrus
3
type I muscle cell
3
type I pneumocyte
3
type II muscle cell
2
hindlimb muscle
2
muscle of leg
2
Ammon's horn
2
HepG2
2
MIN6
2
Muller cell
2
Rh-4 cell
2
T follicular helper cell
2
T-helper 17 cell
2
T-helper 2 cell
2
acute myeloid leukemia cell
2
aortic endothelial cell
2
ascending aorta
2
astrocyte of the cerebellum
2
astrocyte of the hippocampus
2
blood vessel smooth muscle cell
2
bone marrow cell
2
capillary endothelial cell
2
central memory CD8-positive, alpha-beta T cell
2
ciliated cell
2
club cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
endocardial cell
2
enteric neuron
2
enteric smooth muscle cell
2
epithelial cell of esophagus
2
epithelial cell of proximal tubule
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
gamma-delta T cell
2
glial cell
2
heart right ventricle
2
kidney capillary endothelial cell
2
kidney epithelial cell
2
kidney tubule cell
2
left cardiac atrium
2
left renal cortex interstitium
2
left renal pelvis
2
leukocyte
2
luminal epithelial cell of mammary gland
2
mammary gland epithelial cell
2
mast cell
2
mature natural killer cell
2
megakaryocyte
2
memory T cell
2
memory regulatory T cell
2
mesangial cell
2
mesenchymal stem cell
2
middle frontal gyrus
2
muscle of arm
2
muscle of leg
2
naive regulatory T cell
2
naive t cell
2
neuron
2
oligodendrocyte
2
oligodendrocyte precursor cell
2
omental fat pad
2
parietal cell
2
peptic cell
2
plasma cell
2
plasmacytoid dendritic cell
2
renal cortex interstitium
2
right kidney
2
right renal cortex interstitium
2
right renal pelvis
2
schwann cell
2
skeletal muscle cell
2
skin fibroblast
2
smooth muscle cell of the brain vasculature
2
smooth muscle cell of the esophagus
2
spinal cord
2
spleen
2
thoracic aorta
2
thyroid follicular cell
2
vascular associated smooth muscle cell
1
brain microvascular endothelial cell
1
left kidney
1
omental fat pad
1
retinal pigment epithelial cell
1
786-O cell
1
A-673 cell
1
A172
1
A549
1
ACHN
1
AG04449 cell
1
AG04450 cell
1
AG08396 cell
1
AG09309 cell
1
AG09319 cell
1
AG10803 cell
1
B-Lymphocytes
1
B-lymphocyte
1
BE(2)-C
1
BJ cell
1
CD1c-positive myeloid dendritic cell
1
CD4-Positive T-Lymphocytes
1
CD4-positive helper T cell
1
CD4-positive, alpha-beta T cell
1
CMK
1
COLO-829 cell
1
COLO205
1
Caco-2 cell
1
Caki2
1
D341 Med cell
1
DG-75 cell
1
Daoy
1
ECC-1
1
G-401 cell
1
GM03348
1
GM04503
Organ
3
brain
Life stage
2
adult
Date released
2
May, 2020
1
June, 2020
Software used
1
deltasvm
1
macs
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
biosample_term_name!
pancreatic ductal cell
biosample_type!
in vitro differentiated cells
Showing 3 of 3 results
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Download
FileSet
DSR176VXD
released
Annotation file set
: Accessible chromatin annotation for Neural Midbrains from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR877TXZ
released
Annotation file set
: Variant allelic effects of midbrain ENCODE DHSseq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR865KNM
released
Annotation file set
: Accessible chromatin of midbrain ENCODE DHSseq
Lab:
AMP-T2D consortium
Project:
AMP