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Schema
Citing CMDGA
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Annotation type
18
candidate regulatory elements
13
target gene predictions
11
chromatin state
11
gene expression
6
accessible chromatin
4
histone modifications
3
differential activity
2
binding sites
1
caQTL
1
eQTL
Annotation Category
6
cis-regulatory elements
Annotation type Category
ATAC-seq
3
DNase-seq
3
snATAC-seq
Available data
6
bed bed3+
2
bigWig
File set status
6
released
Genome assembly (visualization)
6
hg19
Organism
6
Homo sapiens
Biosample type
3
in vitro differentiated cells
3
primary cell
Biosample term
5
endothelial cell
5
pancreatic ductal cell
4
heart
4
macrophage
4
pancreas
4
pancreatic alpha cell
4
pancreatic beta cell
4
pancreatic delta cell
4
pancreatic stellate cell
3
cardiac fibroblast
3
B cell
3
T cell
3
kidney
3
mesenchymal stem cell
3
monocyte
3
natural killer cell
3
osteoblast
3
pancreatic acinar cell
3
regulatory T cell
3
smooth muscle cell
3
stomach
2
Ammon's horn
2
CD8-positive, alpha-beta T cell
2
Rh-4 cell
2
acute myeloid leukemia cell
2
adipocyte
2
bone marrow cell
2
brain
2
brain pericyte
2
capillary endothelial cell
2
caudate nucleus
2
choroid plexus epithelial cell
2
endothelial cell of umbilical vein
2
erythroid cell
2
extracellular matrix secreting cell
2
fibroblast
2
fibroblast of cardiac tissue
2
frontal cortex
2
globus pallidus
2
glomerular endothelial cell
2
glomerular visceral epithelial cell
2
heart left ventricle
2
hepatic stellate cell
2
hepatocyte
2
kidney tubule cell
2
leukocyte
2
medulla oblongata
2
midbrain
2
muscle of leg
2
occipital lobe
2
pancreatic polypeptide-secreting cell
2
pons
2
putamen
2
renal cortical epithelial cell
2
renal pelvis
2
retina
2
retinal pigment epithelial cell
2
right atrium auricular region
2
skeletal muscle fiber
2
skeletal muscle myoblast
2
skeletal muscle satellite cell
2
skin fibroblast
2
spinal cord
2
superior temporal gyrus
2
tibial artery
2
tibial nerve
2
type I muscle cell
2
type II muscle cell
1
hindlimb muscle
1
786-O cell
1
A-673 cell
1
A172
1
A549
1
ACHN
1
AG04449 cell
1
AG04450 cell
1
AG08396 cell
1
AG09309 cell
1
AG09319 cell
1
AG10803 cell
1
B-Lymphocytes
1
B-lymphocyte
1
BE(2)-C
1
BJ cell
1
CD1c-positive myeloid dendritic cell
1
CD4-Positive T-Lymphocytes
1
CD4-positive helper T cell
1
CMK
1
COLO-829 cell
1
COLO205
1
Caco-2 cell
1
Caki2
1
D341 Med cell
1
DG-75 cell
1
Daoy
1
ECC-1
1
G-401 cell
1
GM03348
1
GM04503
1
GM04504
1
GM06990
1
GM10248
1
GM10266
1
GM12864
1
GM12865
1
GM12878
1
GM13976
1
GM13977
1
GM18507
1
GM19240
1
GM20000
1
GM23248
1
GP5d
1
Glioblastoma
1
H1-hESC
1
H4
1
H7-hESC
1
HAC cell
1
HAP-1
1
HBMEC cell
1
HCT-116 cell
1
HEK293
1
HGF
1
HL-60
1
HT-29
1
HUES6
1
HUES8
1
HeLa cell
1
HepG2
1
Hodgkin lymphoma cell line
1
HuH-7
1
HuTu-80 cell
1
IMR-90
1
Ishikawa
1
Jurkat
1
K562
1
KARPAS-422 cell
1
KBM-7
1
Kasumi-1
1
L-1236 cell
1
L-428 cell
1
L1-S8
1
L1-S8R
1
LHCN-M2
1
LNCAP
1
LoVo cell
1
M059J
1
MCF-7
1
MCF10A-Er-Src cell
1
MDA-MB-231 cell
1
MG63
1
MM.1S
1
MOLM-13 cell
1
Myoblasts
1
NAMALWA cell
1
NB-4 cell
1
NCCIT cell
1
NCI-H226 cell
1
NHBE cell
1
NHDF cell
1
NHEK
1
NT2-D1 cell
1
Normal Human Astrocytes
1
OCI-AML3
1
OCI-LY7
1
PA-TU-8988T cell
1
PANC-1 cell
1
PC-3
1
PC-9
1
Peyer's patch
1
RCC 7860
1
REH cell
1
RKO
1
RPMI7951
1
RPMI8226
1
RS4-11 cell
1
RWPE1
1
Rh-5 cell
1
Rhabdomyosarcoma
1
SAEC
1
SGBS preadipocytes
1
SJCRH30
1
SJSA1
1
SK-CO-1
1
SK-N-DZ
1
SK-N-MC
1
SK-N-SH_RA
1
SKH1-Hr hr
1
SKMC
1
SUDHL5
1
SW1116
1
SW480
1
Saos-2 cell
1
Schwann cell
1
T-47D cell
1
T-helper 1 cell
1
T84
1
Th1 cell
1
Th17 cell
1
Th2 cell
Organ
3
connective tissue
Life stage
1
unknown
Date released
3
June, 2020
1
April, 2020
1
February, 2024
1
May, 2022
Software used
5
macs
Lab
4
AMP-T2D consortium
1
Stephen Parker, UMich
1
Xin Sun, UCSD
Project
5
AMP
1
LungMap
RFA
4
AMP
ENCODE3
1
AMP2
1
LungMap2
annotation_type_category!
ATAC-seq
award.rfa!
ENCODE3
Showing 6 of 6 results
table-tab-icon
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Download
FileSet
DSR707RQM
released
Annotation file set
: Accessible chromatin from snATAC-seq of mesenchymal stem cell from human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR608YQN
released
Annotation file set
: ATAC-seq peaks in B cells from lung snATAC-seq
Lab:
Xin Sun, UCSD
Project:
LungMap
FileSet
DSR847RRB
released
Annotation file set
: Cell type chromatin broad peaks and bw of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR497YXK
released
Annotation file set
: Accessible chromatin annotation for Others Mesenchymal stem cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR924GPB
released
Annotation file set
: Accessible chromatin annotation for Blood CD20+ from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR006MLI
released
Annotation file set
: Accessible chromatin annotation for Blood B-cell (CD19+) from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP