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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
4
accessible chromatin
3
differential activity
3
gene expression
3
target gene predictions
1
variant allelic effects
Annotation Category
4
cis-regulatory elements
Annotation type Category
4
snATAC-seq
ATAC-seq
Available data
4
bed bed3+
3
bigWig
1
bam
1
bed gappedPeak
1
bigBed narrowPeak
1
xls
File set status
4
released
Genome assembly (visualization)
4
hg19
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
4
endothelial cell
4
pancreatic alpha cell
4
pancreatic beta cell
4
pancreatic delta cell
3
cardiac fibroblast
3
macrophage
3
monocyte
3
osteoblast
3
pancreatic ductal cell
3
regulatory T cell
3
smooth muscle cell
2
T cell
2
acute myeloid leukemia cell
2
bone marrow cell
2
capillary endothelial cell
2
endothelial cell of umbilical vein
extracellular matrix secreting cell
2
fibroblast
2
glomerular endothelial cell
2
hepatic stellate cell
2
hepatocyte
2
kidney tubule cell
2
leukocyte
2
mesenchymal stem cell
2
natural killer cell
2
pancreatic acinar cell
2
pancreatic polypeptide-secreting cell
2
pancreatic stellate cell
2
renal cortical epithelial cell
2
retinal pigment epithelial cell
2
skeletal muscle fiber
2
skeletal muscle myoblast
2
skeletal muscle satellite cell
2
type I muscle cell
2
type II muscle cell
1
B cell
1
B-Lymphocytes
1
B-lymphocyte
1
CD1c-positive myeloid dendritic cell
1
CD4-Positive T-Lymphocytes
1
CD8-positive, alpha-beta T cell
1
Glioblastoma
1
Ishikawa
1
T-helper 1 cell
1
Th1 cell
1
Th17 cell
1
Th2 cell
1
activated CD4-positive, alpha-beta T cell
1
activated CD8-positive, alpha-beta T cell
1
adipocyte
1
aortic adventitial fibroblast
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
basal cell
1
brain microvascular endothelial cell
1
brain pericyte
1
bronchial epithelial cell
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
ciliated cell
1
club cell
1
conventional dendritic cell
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
endothelial cell of artery
1
endothelial cell of lymphatic vessel
1
epithelial cell of proximal tubule
1
erythrocyte
1
erythroid cell
1
fibroblast of mammary gland
1
fibroblast of peridontal ligament
1
fibroblast of pulmonary artery
1
fibroblast of villous mesenchyme
1
foreskin fibroblast
1
glial cell
1
glomerular visceral epithelial cell
1
iris pigment epithelial cell
1
kidney capillary endothelial cell
1
kidney distal convoluted tubule epithelial cell
1
kidney epithelial cell
1
kidney glomerular epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
mammary epithelial cell
1
megakaryocyte
1
memory B cell
1
myofibroblast cell
1
naive B cell
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
naive thymus-derived CD8-positive, alpha-beta T cell
1
natural killer cell mediated cytotoxicity
1
neoplastic cell
1
neural cell
1
neuroendocrine cell
1
non-classical monocyte
1
non-pigmented ciliary epithelial cell
1
pancreatic endothelial cell
1
pancreatic immune cell
1
pericyte cell
1
peripheral blood stem cell
1
plasmacytoid dendritic cell
1
primordial germ cell
1
proximal tubule cells with injury markers
1
pulmonary artery endothelial cell
1
pulmonary interstitial fibroblast
1
renal epithelial cell
1
skeletal muscle cell
1
skin fibroblast
1
smooth muscle cell of the brain vasculature
1
somatic gonadal cell
1
stellate neuron
1
tracheal epithelial cell
1
trophoblast cell
1
type I pneumocyte
1
type II pneumocyte
Organ
4
epithelium
4
pancreas
Life stage
1
adult
1
unknown
Date released
2
January, 2021
1
February, 2024
1
September, 2022
Software used
4
macs
Lab
3
Kyle Gaulton, UCSD
1
AMP-T2D consortium
Project
2
AMP
2
T1D
RFA
2
AMP
ENCODE3
2
T1D
annotation_type_category!
ATAC-seq
award.rfa!
ENCODE3
biosample_term_name!
extracellular matrix secreting cell
Showing 4 of 4 results
table-tab-icon
matrix-icon
Download
FileSet
DSR938VDA
released
Annotation file set
: Accessible chromatin from snATAC-seq of alpha cells from human pancreatic islet samples
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR018TPI
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of GCGlow_alpha
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR185GHH
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of GCGhigh_alpha
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR593VJK
released
Annotation file set
: pancreatic alpha cell accessible chromatin annotation from snATAC
Lab:
Kyle Gaulton, UCSD
Project:
AMP