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Schema
Citing CMDGA
Clear Filters
Annotation type
1
accessible chromatin
Annotation Category
1
cis-regulatory elements
Annotation type Category
ATAC-seq
1
snATAC-seq
Available data
4
bed bed3+
1
bigWig
File set status
1
released
Genome assembly (visualization)
1
hg19
Organism
1
Homo sapiens
Biosample type
1
primary cell
Biosample term
14
fibroblast
13
endothelial cell
12
excitatory neuron
11
macrophage
10
pericyte cell
7
astrocyte
7
smooth muscle cell
6
pancreatic acinar cell
6
pancreatic ductal cell
5
T cell
5
erythroblast
5
inhibitory neuron
5
pancreatic alpha cell
5
pancreatic beta cell
4
B cell
4
pancreatic delta cell
4
pancreatic stellate cell
4
skeletal muscle satellite cell
4
type II pneumocyte
3
cardiac fibroblast
3
colon epithelial cell
3
cortical cell of adrenal gland
3
endothelial cell of lymphatic vessel
3
enterocyte
3
skeletal muscle fiber
3
type I pneumocyte
2
CD8-positive, alpha-beta T cell
2
Muller cell
2
basal cell
2
blood vessel smooth muscle cell
2
capillary endothelial cell
2
ciliated cell
2
club cell
2
endocardial cell
2
endothelial cell of hepatic sinusoid
2
enteric neuron
2
enteric smooth muscle cell
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
fibroblast of cardiac tissue
2
gabaergic neuron
2
glutamatergic neuron
2
heart
2
heart left ventricle
2
hepatic stellate cell
2
hepatocyte
2
keratinocyte
2
kidney
2
luminal epithelial cell of mammary gland
2
megakaryocyte
2
memory B cell
2
mesangial cell
2
mesothelial cell
2
natural killer cell
2
oligodendrocyte precursor cell
2
pancreas
2
pancreatic polypeptide-secreting cell
2
retinal pigment epithelial cell
2
schwann cell
2
smooth muscle cell of the esophagus
2
type I muscle cell
2
type II muscle cell
1
hindlimb muscle
1
Ammon's horn
1
CD4-positive, alpha-beta T cell
1
Schwann cell
1
activated CD4-positive, alpha-beta T cell
1
activated CD8-positive, alpha-beta T cell
1
adipocyte
1
alveolar macrophage
1
ascending aorta
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
basal cell of epidermis
1
brain
1
brain microvascular endothelial cell
1
brain pericyte
1
cardiac endothelial cell
1
cardiac muscle cell
1
caudate nucleus
1
cerebellar cortex
1
cerebellum
1
cholangiocyte
1
choroid plexus epithelial cell
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
1
colon goblet cell
1
conventional dendritic cell
1
coronary artery
1
eccrine cell
1
endothelial cell of artery
1
endothelial cell of umbilical vein
1
enterochromaffin-like cell
1
enterocyte of epithelium of small intestine
1
enteroendocrine cell
1
epithelial cell of proximal tubule
1
erythrocyte
1
extravillous trophoblast
1
fetal heart
1
fetal thymocyte
1
forelimb muscle
1
foveolar cell of stomach
1
frontal cortex
1
gastric goblet cell
1
glial cell
1
globus pallidus
1
glomerular endothelial cell
1
glomerular visceral epithelial cell
1
goblet cell
1
granular cell of epidermis
1
heart right ventricle
1
hepatoblast
1
intestinal tuft cell
1
islet of Langerhans
1
kidney capillary endothelial cell
1
kidney distal convoluted tubule epithelial cell
kidney epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
kidney tubule cell
1
left cardiac atrium
1
left renal cortex interstitium
1
left renal pelvis
1
leukocyte
1
lung neuroendocrine cell
1
luteal cell
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
mammary gland epithelial cell
1
mast cell
1
mature NK T cell
1
medulla oblongata
1
melanocyte
1
mesenchymal stem cell
1
metanephros
1
microglial cell
1
midbrain
1
middle frontal gyrus
1
monocyte
1
muscle of arm
1
muscle of leg
1
myoepithelial cell
1
myofibroblast cell
1
naive B cell
1
naive t cell
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
naive thymus-derived CD8-positive, alpha-beta T cell
1
natural killer cell mediated cytotoxicity
1
neuroendocrine cell
1
neuron
1
non keratinizing barrier epithelial cell
1
non-classical monocyte
1
occipital lobe
1
oligodendrocyte
1
omental fat pad
1
osteoblast
1
pancreatic A cell
1
pancreatic D cell
1
pancreatic PP cell
1
pancreatic endothelial cell
1
pancreatic immune cell
1
paneth cell
1
parietal cell
1
parietal epithelial cell
1
peptic cell
1
peripheral neuron
1
photoreceptor cell
1
placental hematopoietic stem cell
1
placental villus capillary endothelial cell
1
plasma cell
1
plasmacytoid dendritic cell
1
pons
1
proximal epiphysis of femur
1
proximal tubule cells with injury markers
1
putamen
1
regular atrial cardiac myocyte
1
regulatory T cell
1
renal cortex interstitium
1
renal cortical epithelial cell
1
renal pelvis
1
respiratory goblet cell
1
retina
1
retinal bipolar neuron
1
right atrium auricular region
1
right kidney
1
right renal cortex interstitium
1
right renal pelvis
1
skeletal muscle cell
1
skeletal muscle fibroblast
1
skeletal muscle myoblast
1
skin fibroblast
1
small intestine goblet cell
1
smooth muscle cell of the brain vasculature
1
stellate neuron
1
stomach neuroendocrine cell
1
stromal cell
1
superior temporal gyrus
1
sympathetic neuron
1
thyroid follicular cell
1
tibial artery
1
tibial nerve
Date released
1
January, 2021
Software used
1
macs
Lab
1
Kyle Gaulton, UCSD
Project
1
T1D
RFA
1
T1D
annotation_type_category!
ATAC-seq
biosample_term_name!
kidney epithelial cell
Showing 1 of 1 results
table-tab-icon
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Download
FileSet
DSR828VFT
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of naive_CD8_T
Lab:
Kyle Gaulton, UCSD
Project:
T1D