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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
30
histone modifications
3
accessible chromatin
3
gene expression
2
target gene predictions
1
chromatin state
Annotation Category
3
cis-regulatory elements
Annotation type Category
2
ATAC-seq
DNase-seq
1
snATAC-seq
Available data
3
bed bed3+
3
bigWig
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
1
Homo sapiens
Biosample type
3
primary cell
Biosample term
21
retina
20
pigmented layer of retina
16
monocyte
10
neural progenitor cell
8
EndoC_BH1
7
kidney
6
embryonic stem cell
6
endothelial cell
6
pancreatic beta cell
6
retinal pigment epithelial cell
5
SGBS preadipocytes
5
chondrocyte
5
hepatocyte
5
islet of Langerhans
5
pancreatic alpha cell
5
pancreatic ductal cell
4
adipocyte
4
endothelial cell of hepatic sinusoid
4
glutamatergic neuron
4
pancreatic acinar cell
4
pancreatic delta cell
4
pancreatic stellate cell
3
B cell
3
CD8-positive, alpha-beta T cell
3
liver
3
macrophage
3
memory B cell
3
naive B cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
natural killer cell
3
regulatory T cell
3
smooth muscle cell
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
T cell
2
T follicular helper cell
2
T-helper 1 cell
2
T-helper 17 cell
2
T-helper 2 cell
2
adipose tissue
2
adipose-derived stem cell
2
aortic endothelial cell
2
capillary endothelial cell
2
central memory CD8-positive, alpha-beta T cell
2
coronary artery
2
differentiating adipose-derived stem cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
extracellular matrix secreting cell
2
fibroblast
2
gamma-delta T cell
2
leukocyte
2
mature natural killer cell
2
memory T cell
2
memory regulatory T cell
2
mesenchymal stem cell
2
naive regulatory T cell
2
osteoblast
2
pancreatic polypeptide-secreting cell
2
plasmacytoid dendritic cell
2
skeletal muscle fiber
2
skeletal muscle satellite cell
2
subcutaneous adipose tissue
2
type I muscle cell
2
type II muscle cell
1
CD4-positive helper T cell
1
HepG2
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
Schwann cell
1
activated CD4-positive, alpha-beta T cell
1
activated CD8-positive, alpha-beta T cell
1
astrocyte
1
basal cell
1
cardiac muscle cell
1
cardiac precursors
1
ciliated cell
1
club cell
1
conventional dendritic cell
1
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
endothelial cell of artery
1
endothelial cell of lymphatic vessel
1
erythrocyte
1
excitatory neuron
1
gabaergic neuron
1
glial cell
1
glomerular visceral epithelial cell
1
heart
heart left ventricle
1
hippocampal neuron
1
immature natural killer cell
1
kidney distal convoluted tubule epithelial cell
1
kidney glomerular epithelial cell
1
kidney interstitial cell
1
kidney loop of Henle epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
lower motor neuron
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
megakaryocyte
1
microglial cell/astrocyte
1
myeloid dendritic cell
1
myofibroblast cell
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
natural killer cell mediated cytotoxicity
1
neural cell
1
neuroendocrine cell
1
neuron
1
neuron cell of Hypothalamus (neuron)
1
non-classical monocyte
1
non-neuronal cell
1
oligodendrocyte
1
omental fat pad
1
pancreas
1
pancreatic A cell
1
pancreatic D cell
1
pancreatic PP cell
1
pancreatic endothelial cell
1
pancreatic immune cell
1
pericyte cell
1
plasma cell
1
preadipocyte
1
proximal epiphysis
1
proximal epiphysis of femur
1
proximal epiphysis of humerus
1
proximal epiphysis of tibia
1
proximal tubule cells with injury markers
1
renal intercalated cell
1
renal principal cell
1
right atrium auricular region
1
smooth muscle cell of the coronary artery
1
spleen
1
stellate neuron
1
thoracic aorta
1
tibial artery
1
tibial nerve
1
tissue-resident macrophage
1
type B pancreatic cell
1
type I pneumocyte
1
type II pneumocyte
Date released
2
May, 2020
1
January, 2021
Software used
1
macs
Lab
2
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Project
2
AMP
1
T1D
RFA
2
AMP
ENCODE3
1
T1D
annotation_type_category!
DNase-seq
award.rfa!
ENCODE3
biosample_term_name!
heart left ventricle
Showing 3 of 3 results
table-tab-icon
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Download
FileSet
DSR805RPA
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of pancreatic_CD8_T
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR590HEP
released
Annotation file set
: GSE118189 ATACseq accessible chromatin of normal CD8-positive, alpha-beta T cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR935PWD
released
Annotation file set
: GSE118189 ATACseq accessible chromatin of LPS-stimulated CD8-positive, alpha-beta T cell
Lab:
AMP-T2D consortium
Project:
AMP