Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
6
accessible chromatin
6
chromatin state
2
gene expression
1
binding sites
1
histone modifications
1
target gene predictions
1
variant allelic effects
Annotation Category
6
cis-regulatory elements
Annotation type Category
3
ATAC-seq
3
snATAC-seq
DNase-seq
Available data
6
bed bed3+
3
bigWig
File set status
6
released
Genome assembly (visualization)
6
hg19
2
GRCh38
Organism
6
Homo sapiens
Biosample type
3
in vitro differentiated cells
3
primary cell
Biosample term
21
retina
20
pigmented layer of retina
16
endothelial cell
16
fibroblast
16
monocyte
13
excitatory neuron
12
macrophage
10
neural progenitor cell
10
pericyte cell
9
smooth muscle cell
8
EndoC_BH1
8
astrocyte
8
pancreatic beta cell
7
kidney
7
pancreatic acinar cell
7
pancreatic alpha cell
7
pancreatic ductal cell
7
retinal pigment epithelial cell
6
B cell
6
T cell
6
embryonic stem cell
6
endothelial cell of hepatic sinusoid
6
glutamatergic neuron
6
hepatocyte
6
islet of Langerhans
5
SGBS preadipocytes
5
adipocyte
5
chondrocyte
5
erythroblast
5
inhibitory neuron
5
pancreatic delta cell
5
skeletal muscle fiber
5
skeletal muscle satellite cell
4
CD8-positive, alpha-beta T cell
4
memory B cell
4
pancreatic stellate cell
4
type II pneumocyte
3
colon epithelial cell
3
cortical cell of adrenal gland
3
endothelial cell of lymphatic vessel
3
enterocyte
3
gabaergic neuron
3
liver
3
naive B cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
natural killer cell
3
regulatory T cell
3
type I muscle cell
3
type I pneumocyte
3
type II muscle cell
2
Muller cell
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
T follicular helper cell
2
T-helper 1 cell
2
T-helper 17 cell
2
T-helper 2 cell
2
adipose tissue
2
adipose-derived stem cell
2
aortic endothelial cell
2
basal cell
2
blood vessel smooth muscle cell
2
capillary endothelial cell
2
central memory CD8-positive, alpha-beta T cell
2
ciliated cell
2
club cell
2
coronary artery
2
differentiating adipose-derived stem cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
endocardial cell
2
enteric neuron
2
enteric smooth muscle cell
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
fibroblast of cardiac tissue
2
gamma-delta T cell
2
glial cell
2
keratinocyte
2
leukocyte
2
luminal epithelial cell of mammary gland
2
mature natural killer cell
2
megakaryocyte
2
memory T cell
2
memory regulatory T cell
2
mesangial cell
2
mesenchymal stem cell
2
mesothelial cell
2
naive regulatory T cell
2
neuron
2
oligodendrocyte
2
oligodendrocyte precursor cell
2
osteoblast
2
pancreatic polypeptide-secreting cell
2
plasma cell
2
plasmacytoid dendritic cell
2
schwann cell
2
smooth muscle cell of the esophagus
2
subcutaneous adipose tissue
1
CD4-positive helper T cell
1
CD4-positive, alpha-beta T cell
1
HepG2
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
Schwann cell
1
activated CD4-positive, alpha-beta T cell
1
activated CD8-positive, alpha-beta T cell
1
alveolar macrophage
1
basal cell of epidermis
1
cardiac endothelial cell
1
cardiac muscle cell
1
cardiac precursors
1
cholangiocyte
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
1
colon goblet cell
1
conventional dendritic cell
1
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
eccrine cell
1
endothelial cell of artery
1
enterochromaffin-like cell
1
enterocyte of epithelium of small intestine
1
enteroendocrine cell
1
erythrocyte
1
extravillous trophoblast
1
fetal thymocyte
1
foveolar cell of stomach
1
gastric goblet cell
1
glomerular visceral epithelial cell
1
goblet cell
1
granular cell of epidermis
1
heart
1
heart left ventricle
1
hepatic stellate cell
1
hepatoblast
1
hippocampal neuron
1
immature natural killer cell
1
intestinal tuft cell
1
kidney distal convoluted tubule epithelial cell
1
kidney glomerular epithelial cell
1
kidney interstitial cell
1
kidney loop of Henle epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
lower motor neuron
1
lung neuroendocrine cell
1
luteal cell
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
mammary gland epithelial cell
1
mast cell
1
mature NK T cell
1
melanocyte
1
metanephros
1
microglial cell
1
microglial cell/astrocyte
1
myeloid dendritic cell
1
myoepithelial cell
1
myofibroblast cell
1
naive t cell
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
natural killer cell mediated cytotoxicity
1
neural cell
1
neuroendocrine cell
1
neuron cell of Hypothalamus (neuron)
1
non keratinizing barrier epithelial cell
1
non-classical monocyte
1
non-neuronal cell
1
omental fat pad
1
pancreas
1
pancreatic A cell
1
pancreatic D cell
1
pancreatic PP cell
1
pancreatic endothelial cell
1
pancreatic immune cell
1
paneth cell
1
parietal cell
1
parietal epithelial cell
1
peptic cell
1
peripheral neuron
1
photoreceptor cell
1
placental hematopoietic stem cell
1
placental villus capillary endothelial cell
1
preadipocyte
1
proximal epiphysis
1
proximal epiphysis of femur
1
proximal epiphysis of humerus
1
proximal epiphysis of tibia
1
proximal tubule cells with injury markers
1
regular atrial cardiac myocyte
1
renal intercalated cell
1
renal principal cell
1
respiratory goblet cell
1
retinal bipolar neuron
1
right atrium auricular region
1
skeletal muscle fibroblast
1
skin fibroblast
Organ
5
connective tissue
1
epithelium
Date released
2
February, 2024
2
November, 2021
1
November, 2022
1
October, 2019
Software used
6
macs
Lab
3
AMP-T2D consortium
2
Bing Ren, UCSD
1
Stephen Parker, UMich
Project
4
AMP
2
ENCODE
RFA
3
AMP
2
ENCODE3
1
AMP2
annotation_type_category!
DNase-seq
biosample_term_name!
Caki2
Showing 6 of 6 results
table-tab-icon
matrix-icon
Download
FileSet
DSR654XDX
released
Annotation file set
: Open chromatin regions that exhibit differential accessibility in the lipid-challenged adipocytes
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR161NNW
released
Annotation file set
: Accessible chromatin of ATAC-seq in a human cell model of adipocytes day 14
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR629RBK
released
Annotation file set
: Accessible chromatin annotation of Enterochromaffin Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR987PCG
released
Annotation file set
: Accessible chromatin annotation of Adipocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR083CQX
released
Annotation file set
: Cell type chromatin broad peaks and bw of adipocyte from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR645XXX
released
Annotation file set
: Adipocyte accessible chromatin annotation of overlapping ATAC-seq sites from 5 samples with most significant peak selected
Lab:
AMP-T2D consortium
Project:
AMP