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Schema
Citing CMDGA
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Annotation type
12
histone modifications
1
accessible chromatin
1
gene expression
Annotation Category
1
cis-regulatory elements
Annotation type Category
1
snATAC-seq
Available data
1
bed bed3+
File set status
1
released
Genome assembly (visualization)
1
GRCh38
1
hg19
Organism
1
Homo sapiens
Biosample type
1
primary cell
Biosample term
21
retina
20
pigmented layer of retina
5
hepatocyte
5
islet of Langerhans
4
endothelial cell of hepatic sinusoid
4
glutamatergic neuron
2
endothelial cell
2
fibroblast
2
pancreatic alpha cell
2
pancreatic beta cell
1
HepG2
1
T cell
1
gabaergic neuron
1
glomerular visceral epithelial cell
1
heart left ventricle
1
kidney distal convoluted tubule epithelial cell
1
kidney glomerular epithelial cell
1
kidney interstitial cell
1
kidney loop of Henle epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
liver
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
microglial cell/astrocyte
1
neuron
1
non-neuronal cell
1
oligodendrocyte
1
omental fat pad
1
osteoblast
1
pancreas
1
pancreatic acinar cell
1
pancreatic delta cell
1
pancreatic ductal cell
1
pancreatic endothelial cell
1
pancreatic immune cell
1
pancreatic polypeptide-secreting cell
1
pancreatic stellate cell
1
proximal tubule cells with injury markers
1
renal intercalated cell
1
renal principal cell
1
smooth muscle cell
1
subcutaneous adipose tissue
0
CD8-positive, alpha-beta T cell
Life stage
1
adult
1
unknown
Date released
1
May, 2022
Software used
1
macs
Lab
1
Bing Ren, UCSD
Project
1
AMP
RFA
1
AMP2
annotation_type_category!
DNase-seq
biosample_term_name!
CD4-Positive T-Lymphocytes
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FileSet
DSR267QTT
released
Annotation file set
: Accessible chromatin annotation of Smooth muscle cells from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP