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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
8
chromatin state
3
Fine-mapped variants
3
accessible chromatin
3
gene expression
2
candidate regulatory elements
2
eQTL
2
variant allelic effects
1
binding sites
1
caQTL
1
histone modifications
Annotation Category
3
cis-regulatory elements
Annotation type Category
2
ATAC-seq
DNase-seq
1
snATAC-seq
Available data
7
bed bed3+
bigWig
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
2
in vitro differentiated cells
1
primary cell
Biosample term
10
neural progenitor cell
7
EndoC_BH1
7
pigmented layer of retina
6
embryonic stem cell
6
retina
5
chondrocyte
4
endothelial cell of hepatic sinusoid
4
glutamatergic neuron
4
retinal pigment epithelial cell
3
SGBS preadipocytes
3
adipocyte
2
adipose-derived stem cell
2
differentiating adipose-derived stem cell
2
endothelial cell
2
fibroblast
2
skeletal muscle fiber
2
smooth muscle cell
1
CD4-positive helper T cell
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
T cell
1
adipose tissue
1
gabaergic neuron
1
glial cell
1
islet of Langerhans
1
leukocyte
1
liver
1
macrophage
1
mesenchymal stem cell
1
microglial cell/astrocyte
1
naive regulatory T cell
1
neural cell
1
neuron
1
neuron cell of Hypothalamus (neuron)
1
non-neuronal cell
1
oligodendrocyte
1
pancreatic alpha cell
1
pancreatic beta cell
1
pancreatic delta cell
1
preadipocyte
1
skeletal muscle satellite cell
1
type I muscle cell
1
type II muscle cell
Organ
3
connective tissue
Date released
2
February, 2024
1
November, 2022
Software used
3
macs
Lab
2
AMP-T2D consortium
1
Stephen Parker, UMich
Project
3
AMP
RFA
2
AMP
1
AMP2
annotation_type_category!
DNase-seq
files.file_type!
bigWig
Showing 3 of 3 results
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FileSet
DSR654XDX
released
Annotation file set
: Open chromatin regions that exhibit differential accessibility in the lipid-challenged adipocytes
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR161NNW
released
Annotation file set
: Accessible chromatin of ATAC-seq in a human cell model of adipocytes day 14
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR083CQX
released
Annotation file set
: Cell type chromatin broad peaks and bw of adipocyte from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP