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Schema
Citing CMDGA
Clear Filters
Annotation type
8
accessible chromatin
2
histone modifications
1
binding sites
Annotation Category
8
cis-regulatory elements
Annotation type Category
8
ATAC-seq
DNase-seq
Available data
8
bed bed3+
8
bigWig
File set status
8
released
Genome assembly (visualization)
8
GRCh38
8
hg19
Organism
8
Homo sapiens
Biosample type
7
tissue
1
in vitro differentiated cells
Biosample term
21
retina
20
pigmented layer of retina
16
endothelial cell
16
fibroblast
14
monocyte
13
excitatory neuron
11
macrophage
10
neural progenitor cell
9
pericyte cell
9
smooth muscle cell
8
EndoC_BH1
8
astrocyte
8
pancreatic beta cell
7
kidney
7
pancreatic acinar cell
7
pancreatic alpha cell
7
pancreatic ductal cell
7
retinal pigment epithelial cell
6
embryonic stem cell
6
endothelial cell of hepatic sinusoid
6
glutamatergic neuron
6
hepatocyte
5
SGBS preadipocytes
5
T cell
5
adipocyte
5
chondrocyte
5
erythroblast
5
inhibitory neuron
5
pancreatic delta cell
5
skeletal muscle fiber
5
skeletal muscle satellite cell
4
islet of Langerhans
4
pancreatic stellate cell
3
B cell
3
colon epithelial cell
cortical cell of adrenal gland
3
enterocyte
3
gabaergic neuron
3
liver
3
type I muscle cell
3
type II muscle cell
3
type II pneumocyte
2
CD8-positive, alpha-beta T cell
2
Muller cell
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
adipose tissue
2
adipose-derived stem cell
2
aortic endothelial cell
2
blood vessel smooth muscle cell
2
coronary artery
2
differentiating adipose-derived stem cell
2
endocardial cell
2
endothelial cell of lymphatic vessel
2
enteric neuron
2
enteric smooth muscle cell
2
fetal cardiomyocyte
2
fibroblast of cardiac tissue
2
glial cell
2
keratinocyte
2
leukocyte
2
luminal epithelial cell of mammary gland
2
megakaryocyte
2
memory B cell
2
mesangial cell
2
mesenchymal stem cell
2
mesothelial cell
2
neuron
2
oligodendrocyte
2
oligodendrocyte precursor cell
2
osteoblast
2
pancreatic polypeptide-secreting cell
2
schwann cell
2
smooth muscle cell of the esophagus
2
subcutaneous adipose tissue
2
type I pneumocyte
1
CD4-positive, alpha-beta T cell
1
HepG2
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
Schwann cell
1
activated CD4-positive, alpha-beta T cell
1
activated CD8-positive, alpha-beta T cell
1
alveolar macrophage
1
basal cell
1
basal cell of epidermis
1
cardiac endothelial cell
1
cardiac muscle cell
1
cardiac precursors
1
cholangiocyte
1
chromaffin cell of adrenal gland
1
ciliated cell
1
ciliated epithelial cell
1
club cell
1
colon goblet cell
1
conventional dendritic cell
1
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
eccrine cell
1
enterochromaffin-like cell
1
enterocyte of epithelium of small intestine
1
enteroendocrine cell
1
extravillous trophoblast
1
fetal thymocyte
1
foveolar cell of stomach
1
gastric goblet cell
1
glomerular visceral epithelial cell
1
goblet cell
1
granular cell of epidermis
1
heart
1
heart left ventricle
1
hepatic stellate cell
1
hepatoblast
1
hippocampal neuron
1
intestinal tuft cell
1
kidney distal convoluted tubule epithelial cell
1
kidney glomerular epithelial cell
1
kidney interstitial cell
1
kidney loop of Henle epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
lower motor neuron
1
lung neuroendocrine cell
1
luteal cell
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
mammary gland epithelial cell
1
mast cell
1
mature NK T cell
1
melanocyte
1
metanephros
1
microglial cell
1
microglial cell/astrocyte
1
myoepithelial cell
1
naive B cell
1
naive t cell
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
naive thymus-derived CD8-positive, alpha-beta T cell
1
natural killer cell
1
natural killer cell mediated cytotoxicity
1
neural cell
1
neuron cell of Hypothalamus (neuron)
1
non keratinizing barrier epithelial cell
1
non-classical monocyte
1
non-neuronal cell
1
omental fat pad
1
pancreas
1
pancreatic A cell
1
pancreatic D cell
1
pancreatic PP cell
1
pancreatic endothelial cell
1
pancreatic immune cell
1
paneth cell
1
parietal cell
1
parietal epithelial cell
1
peptic cell
1
peripheral neuron
1
photoreceptor cell
1
placental hematopoietic stem cell
1
placental villus capillary endothelial cell
1
plasma cell
1
plasmacytoid dendritic cell
1
preadipocyte
1
proximal epiphysis
1
proximal epiphysis of femur
1
proximal epiphysis of humerus
1
proximal epiphysis of tibia
1
proximal tubule cells with injury markers
1
regular atrial cardiac myocyte
1
regulatory T cell
1
renal intercalated cell
1
renal principal cell
1
respiratory goblet cell
1
retinal bipolar neuron
1
right atrium auricular region
1
skeletal muscle fibroblast
1
skin fibroblast
1
small intestine goblet cell
1
smooth muscle cell of the coronary artery
1
spleen
1
stellate neuron
1
stomach neuroendocrine cell
1
stromal cell
1
sympathetic neuron
1
thoracic aorta
1
thyroid follicular cell
1
tibial artery
1
tibial nerve
1
tissue-resident macrophage
1
trophoblast giant cell
1
type B pancreatic cell
1
type I cell of adrenal cortex
1
type II cell of adrenal cortex
1
ureteric bud
1
uterine smooth muscle cell
1
ventricular cardiac muscle cell
Disease term
2
diabetes mellitus,hypertensive disorder
1
chronic kidney disease
1
hypertensive disorder
1
hypertensive disorder, chronic kidney disease
Organ
7
kidney
Date released
7
August, 2021
1
October, 2019
Software used
8
macs
Lab
7
Katalin Susztak, Upenn
1
AMP-T2D consortium
Project
8
AMP
RFA
7
AMP2
1
AMP
annotation_type_category!
DNase-seq
biosample_term_name!
cortical cell of adrenal gland
Showing 8 of 8 results
table-tab-icon
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Download
FileSet
DSR016ZOX
released
Annotation file set
: Accessible chromatin of kidney from Katalin Susztak 75kidney Project ATAC-seq
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR073KQB
released
Annotation file set
: Accessible chromatin of kidney from Katalin Susztak 75kidney Project ATAC-seq for hypertension group
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR880LWO
released
Annotation file set
: Accessible chromatin of kidney from Katalin Susztak 75kidney Project ATAC-seq for diabetes mellitus/Hypertension group
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR772HPX
released
Annotation file set
: Accessible chromatin of kidney from Katalin Susztak 75kidney Project ATAC-seq for diabetic kidney disease/Hypertension group
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR307LRO
released
Annotation file set
: Accessible chromatin of kidney from Katalin Susztak 75kidney Project ATAC-seq for control group
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR574ZEL
released
Annotation file set
: Accessible chromatin of kidney from Katalin Susztak 75kidney Project ATAC-seq for chronic kidney disease/hypertension group
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR937TUB
released
Annotation file set
: Accessible chromatin of kidney from Katalin Susztak 75kidney Project ATAC-seq for chronic kidney disease group
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR857JVP
released
Annotation file set
: Cardiac precursors accessible chromatin annotation
Lab:
AMP-T2D consortium
Project:
AMP