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Schema
Citing CMDGA
Clear Filters
Annotation type
6
chromatin state
6
target gene predictions
4
accessible chromatin
4
candidate regulatory elements
2
gene expression
1
binding sites
1
histone modifications
Annotation Category
4
cis-regulatory elements
Annotation type Category
3
ATAC-seq
snATAC-seq
1
DNase-seq
Available data
4
bed bed3+
1
bigWig
File set status
4
released
Genome assembly (visualization)
4
hg19
Organism
4
Homo sapiens
Biosample type
4
in vitro differentiated cells
Biosample term
5
chondrocyte
5
osteoblast
4
adipocyte
3
cardiac fibroblast
2
adipose tissue
2
brain pericyte
2
fibroblast of cardiac tissue
2
hepatic stellate cell
2
omental fat pad
2
pancreatic stellate cell
2
skin fibroblast
2
subcutaneous adipose tissue
1
GM23248
1
SGBS preadipocytes
1
adipose-derived mesenchymal stem cell
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
fibroblast of mammary gland
1
fibroblast of peridontal ligament
1
fibroblast of pulmonary artery
1
fibroblast of the conjunctiva
1
fibroblast of villous mesenchyme
1
foreskin fibroblast
1
mesenchymal stem cell
1
preadipocyte
1
pulmonary interstitial fibroblast
0
BE(2)-C
Organ
4
connective tissue
3
brain
2
epithelium
2
vasculature
Date released
1
February, 2024
1
June, 2020
1
November, 2022
1
October, 2019
Software used
4
macs
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
annotation_type_category!
snATAC-seq
Showing 4 of 4 results
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Download
FileSet
DSR654XDX
released
Annotation file set
: Open chromatin regions that exhibit differential accessibility in the lipid-challenged adipocytes
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR161NNW
released
Annotation file set
: Accessible chromatin of ATAC-seq in a human cell model of adipocytes day 14
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR073DMC
released
Annotation file set
: Accessible chromatin annotation for Adipocyte Adipocytes from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR645XXX
released
Annotation file set
: Adipocyte accessible chromatin annotation of overlapping ATAC-seq sites from 5 samples with most significant peak selected
Lab:
AMP-T2D consortium
Project:
AMP