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Schema
Citing CMDGA
Clear Filters
Annotation type
28
candidate regulatory elements
23
target gene predictions
14
chromatin state
11
gene expression
2
accessible chromatin
2
binding sites
2
eQTL
1
histone modifications
Annotation Category
2
cis-regulatory elements
Annotation type Category
snATAC-seq
1
ATAC-seq
Available data
2
bed bed3+
2
bigWig
File set status
2
released
Genome assembly (visualization)
2
hg19
1
GRCh38
Organism
2
Homo sapiens
Biosample type
1
primary cell
1
tissue
Biosample term
22
retina
20
pigmented layer of retina
15
monocyte
10
neural progenitor cell
9
kidney
8
EndoC_BH1
7
retinal pigment epithelial cell
6
embryonic stem cell
6
hepatocyte
5
SGBS preadipocytes
5
chondrocyte
5
islet of Langerhans
4
endothelial cell of hepatic sinusoid
4
glutamatergic neuron
3
cardiac fibroblast
3
adipocyte
3
coronary artery
3
heart
3
heart left ventricle
3
liver
3
osteoblast
3
pancreas
3
pancreatic ductal cell
2
B cell
2
CD8-positive, alpha-beta T cell
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
T follicular helper cell
2
T-helper 1 cell
2
T-helper 17 cell
2
T-helper 2 cell
2
adipose tissue
2
adipose-derived stem cell
2
aortic endothelial cell
2
cardiac muscle cell
2
central memory CD8-positive, alpha-beta T cell
2
differentiating adipose-derived stem cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
endothelial cell
2
gamma-delta T cell
2
glomerular visceral epithelial cell
2
mature natural killer cell
2
memory B cell
2
memory T cell
2
memory regulatory T cell
2
naive B cell
2
naive regulatory T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
omental fat pad
2
pancreatic acinar cell
2
pancreatic beta cell
2
pancreatic stellate cell
2
regulatory T cell
2
right atrium auricular region
2
subcutaneous adipose tissue
2
tibial artery
2
tibial nerve
1
hindlimb muscle
1
Ammon's horn
1
CD4-positive helper T cell
1
HepG2
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
Schwann cell
1
ascending aorta
1
astrocyte
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
brain
1
brain microvascular endothelial cell
1
brain pericyte
1
cardiac precursors
1
caudate nucleus
1
cerebellar cortex
1
cerebellum
1
choroid plexus epithelial cell
1
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
endothelial cell of umbilical vein
1
epithelial cell of proximal tubule
1
excitatory neuron
1
fetal heart
1
forelimb muscle
1
frontal cortex
1
gabaergic neuron
1
globus pallidus
1
glomerular endothelial cell
1
heart right ventricle
1
hepatic stellate cell
1
hippocampal neuron
1
immature natural killer cell
1
kidney capillary endothelial cell
1
kidney epithelial cell
1
kidney glomerular epithelial cell
1
kidney interstitial cell
1
kidney loop of Henle epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
kidney tubule cell
1
left cardiac atrium
1
left renal cortex interstitium
1
left renal pelvis
1
lower motor neuron
1
medulla oblongata
1
microglial cell/astrocyte
1
midbrain
1
middle frontal gyrus
1
muscle of arm
1
muscle of leg
1
myeloid dendritic cell
1
natural killer cell
1
neuron
1
neuron cell of Hypothalamus (neuron)
1
non-neuronal cell
1
occipital lobe
1
oligodendrocyte
1
pancreatic A cell
1
pancreatic D cell
1
pancreatic PP cell
1
pancreatic alpha cell
1
plasma cell
1
plasmacytoid dendritic cell
1
pons
1
preadipocyte
1
proximal epiphysis
1
proximal epiphysis of humerus
1
proximal epiphysis of tibia
1
putamen
1
renal cortex interstitium
1
renal cortical epithelial cell
1
renal intercalated cell
1
renal pelvis
1
renal principal cell
1
right kidney
1
right renal cortex interstitium
1
right renal pelvis
1
skeletal muscle cell
1
skeletal muscle myoblast
1
smooth muscle cell of the brain vasculature
1
smooth muscle cell of the coronary artery
1
spleen
1
superior temporal gyrus
1
thoracic aorta
1
tissue-resident macrophage
1
type B pancreatic cell
Organ
2
epithelium
Life stage
1
adult
Date released
1
August, 2021
1
February, 2024
June, 2020
Software used
2
macs
Lab
1
Katalin Susztak, Upenn
1
Kyle Gaulton, UCSD
Project
2
AMP
RFA
1
AMP
1
AMP2
annotation_type_category!
snATAC-seq
month_released!
June, 2020
Showing 2 of 2 results
table-tab-icon
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Download
FileSet
DSR369PUU
released
Annotation file set
: accessible chromatin annotation from scATAC-seq of Endothelial
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR493PXL
released
Annotation file set
: Accessible chromatin from Katalin Susztak 75kidney Project of Endothelial cells
Lab:
Katalin Susztak, Upenn
Project:
AMP