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Schema
Citing CMDGA
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Annotation type
10
gene expression
7
target gene predictions
2
accessible chromatin
2
binding sites
1
eQTL
1
histone modifications
Annotation Category
2
cis-regulatory elements
Annotation type Category
snATAC-seq
1
ATAC-seq
Available data
2
bed bed3+
2
bigWig
File set status
2
released
Genome assembly (visualization)
2
hg19
1
GRCh38
Organism
2
Homo sapiens
Biosample type
1
primary cell
1
tissue
Biosample term
20
pigmented layer of retina
8
EndoC_BH1
8
retinal pigment epithelial cell
7
hepatocyte
4
endothelial cell of hepatic sinusoid
4
pancreatic ductal cell
3
glomerular visceral epithelial cell
2
aortic endothelial cell
2
choroid plexus epithelial cell
2
endothelial cell
2
endothelial cell of umbilical vein
2
glomerular endothelial cell
2
kidney glomerular epithelial cell
2
kidney tubule cell
2
pancreatic acinar cell
2
pancreatic beta cell
2
renal cortical epithelial cell
1
brain microvascular endothelial cell
1
breast epithelium
1
bronchial epithelial cell
1
dermis microvascular lymphatic vessel endothelial cell
1
epithelial cell of prostate
1
epithelial cell of proximal tubule
1
esophagus squamous epithelium
1
foreskin keratinocyte
1
glomerular epithelium
1
iris pigment epithelial cell
1
kidney capillary endothelial cell
1
kidney epithelial cell
1
kidney loop of Henle epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
mammary epithelial cell
1
mammary gland epithelial cell
1
non-pigmented ciliary epithelial cell
1
pancreatic A cell
1
pancreatic D cell
1
pancreatic PP cell
1
pancreatic alpha cell
1
pulmonary artery endothelial cell
1
renal cortex tubule
1
renal intercalated cell
1
renal principal cell
1
tracheal epithelial cell
1
type B pancreatic cell
1
urothelial cell
Organ
2
epithelium
Life stage
1
adult
Date released
1
August, 2021
1
February, 2024
Software used
2
macs
Lab
1
Katalin Susztak, Upenn
1
Kyle Gaulton, UCSD
Project
2
AMP
RFA
1
AMP
1
AMP2
annotation_type_category!
snATAC-seq
organ_slims!
urinary bladder
Showing 2 of 2 results
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Download
FileSet
DSR369PUU
released
Annotation file set
: accessible chromatin annotation from scATAC-seq of Endothelial
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR493PXL
released
Annotation file set
: Accessible chromatin from Katalin Susztak 75kidney Project of Endothelial cells
Lab:
Katalin Susztak, Upenn
Project:
AMP