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Schema
Citing CMDGA
Clear Filters
Annotation type
6
gene expression
4
accessible chromatin
3
differential activity
2
binding sites
2
histone modifications
2
target gene predictions
Annotation Category
4
cis-regulatory elements
Annotation type Category
snATAC-seq
1
ATAC-seq
1
DNase-seq
Available data
4
bed bed3+
3
bigWig
File set status
4
released
Genome assembly (visualization)
4
hg19
3
GRCh38
Organism
4
Homo sapiens
Biosample type
2
primary cell
2
tissue
Biosample term
20
pigmented layer of retina
8
EndoC_BH1
8
retinal pigment epithelial cell
7
hepatocyte
4
endothelial cell of hepatic sinusoid
4
pancreatic ductal cell
3
glomerular visceral epithelial cell
2
aortic endothelial cell
2
choroid plexus epithelial cell
2
endothelial cell
2
endothelial cell of umbilical vein
2
glomerular endothelial cell
2
kidney glomerular epithelial cell
2
kidney tubule cell
2
pancreatic acinar cell
2
pancreatic beta cell
2
renal cortical epithelial cell
1
brain microvascular endothelial cell
1
breast epithelium
1
bronchial epithelial cell
1
dermis microvascular lymphatic vessel endothelial cell
1
epithelial cell of prostate
1
epithelial cell of proximal tubule
1
esophagus squamous epithelium
1
foreskin keratinocyte
1
glomerular epithelium
1
iris pigment epithelial cell
1
kidney capillary endothelial cell
1
kidney epithelial cell
1
kidney loop of Henle epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
mammary epithelial cell
1
mammary gland epithelial cell
1
non-pigmented ciliary epithelial cell
1
pancreatic A cell
1
pancreatic D cell
1
pancreatic PP cell
1
pancreatic alpha cell
1
pulmonary artery endothelial cell
1
renal cortex tubule
1
renal intercalated cell
1
renal principal cell
1
tracheal epithelial cell
1
type B pancreatic cell
1
urothelial cell
Organ
4
epithelium
4
pancreas
Life stage
1
child
Date released
2
February, 2024
1
June, 2020
1
October, 2019
Software used
4
macs
Lab
2
AMP-T2D consortium
2
Kyle Gaulton, UCSD
Project
4
AMP
RFA
4
AMP
annotation_type_category!
snATAC-seq
biosample_term_name!
memory regulatory T cell
Showing 4 of 4 results
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Download
FileSet
DSR473EZY
released
Annotation file set
: accessible chromatin annotation from scATAC-seq of MUC5B Ductal
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR183WZN
released
Annotation file set
: accessible chromatin annotation from scATAC-seq of Ductal
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR434XUW
released
Annotation file set
: Accessible chromatin annotation for Pancreas HPDE6 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR920WKD
released
Annotation file set
: Pancreatic ductal cell accessible chromatin annotation of overlapping ATAC-seq sites from 3 samples with most significant peak selected
Lab:
AMP-T2D consortium
Project:
AMP