Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
4
target gene predictions
3
accessible chromatin
Annotation Category
3
cis-regulatory elements
Annotation type Category
3
ATAC-seq
2
snATAC-seq
1
DNase-seq
Available data
3
bed bed3+
1
bigWig
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
3
in vitro differentiated cells
Biosample term
21
retina
20
pigmented layer of retina
13
monocyte
10
neural progenitor cell
8
EndoC_BH1
7
kidney
6
embryonic stem cell
6
retinal pigment epithelial cell
5
SGBS preadipocytes
5
chondrocyte
5
hepatocyte
5
islet of Langerhans
4
endothelial cell of hepatic sinusoid
4
glutamatergic neuron
3
adipocyte
3
liver
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
adipose tissue
2
adipose-derived stem cell
2
aortic endothelial cell
2
coronary artery
2
differentiating adipose-derived stem cell
2
osteoblast
2
pancreatic beta cell
subcutaneous adipose tissue
1
CD4-positive helper T cell
1
HepG2
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
astrocyte
1
cardiac muscle cell
1
cardiac precursors
1
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
endothelial cell
1
excitatory neuron
1
gabaergic neuron
1
glomerular visceral epithelial cell
1
heart
1
heart left ventricle
1
hippocampal neuron
1
kidney glomerular epithelial cell
1
kidney interstitial cell
1
kidney loop of Henle epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
lower motor neuron
1
microglial cell/astrocyte
1
neuron
1
neuron cell of Hypothalamus (neuron)
1
non-neuronal cell
1
oligodendrocyte
1
omental fat pad
1
pancreas
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic ductal cell
1
preadipocyte
1
proximal epiphysis
1
proximal epiphysis of humerus
1
proximal epiphysis of tibia
1
renal intercalated cell
1
renal principal cell
1
right atrium auricular region
1
smooth muscle cell of the coronary artery
1
spleen
1
thoracic aorta
1
tibial artery
1
tibial nerve
Organ
3
connective tissue
Date released
1
February, 2024
1
November, 2022
1
October, 2019
Software used
3
macs
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
biosample_term_name!
subcutaneous adipose tissue
Showing 3 of 3 results
table-tab-icon
matrix-icon
Download
FileSet
DSR654XDX
released
Annotation file set
: Open chromatin regions that exhibit differential accessibility in the lipid-challenged adipocytes
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR161NNW
released
Annotation file set
: Accessible chromatin of ATAC-seq in a human cell model of adipocytes day 14
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR645XXX
released
Annotation file set
: Adipocyte accessible chromatin annotation of overlapping ATAC-seq sites from 5 samples with most significant peak selected
Lab:
AMP-T2D consortium
Project:
AMP