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Schema
Citing CMDGA
Clear Filters
Annotation type
4
accessible chromatin
3
target gene predictions
1
variant allelic effects
Annotation Category
4
cis-regulatory elements
Annotation type Category
4
snATAC-seq
2
DNase-seq
Available data
4
bed bed3+
3
bigWig
1
bam
1
bed gappedPeak
1
bigBed narrowPeak
1
xls
File set status
4
released
Genome assembly (visualization)
5
hg19
GRCh38
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
4
pancreatic alpha cell
4
pancreatic beta cell
4
pancreatic delta cell
3
endothelial cell
2
capillary endothelial cell
2
extracellular matrix secreting cell
2
leukocyte
2
macrophage
2
mesenchymal stem cell
2
natural killer cell
2
pancreatic acinar cell
2
pancreatic ductal cell
2
pancreatic polypeptide-secreting cell
2
pancreatic stellate cell
2
skeletal muscle fiber
2
skeletal muscle satellite cell
2
smooth muscle cell
type I muscle cell
2
type II muscle cell
1
B cell
1
CD8-positive, alpha-beta T cell
1
T cell
1
activated CD4-positive, alpha-beta T cell
1
activated CD8-positive, alpha-beta T cell
1
adipocyte
1
basal cell
1
ciliated cell
1
club cell
1
conventional dendritic cell
1
endothelial cell of artery
1
endothelial cell of lymphatic vessel
1
erythrocyte
1
glial cell
1
kidney distal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
megakaryocyte
1
memory B cell
1
monocyte
1
myofibroblast cell
1
naive B cell
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
naive thymus-derived CD8-positive, alpha-beta T cell
1
natural killer cell mediated cytotoxicity
1
neural cell
1
neuroendocrine cell
1
non-classical monocyte
1
pancreatic endothelial cell
1
pancreatic immune cell
1
pericyte cell
1
plasmacytoid dendritic cell
1
proximal tubule cells with injury markers
1
regulatory T cell
1
stellate neuron
1
type I pneumocyte
1
type II pneumocyte
Organ
4
epithelium
4
pancreas
Life stage
1
adult
1
unknown
Date released
2
January, 2021
1
February, 2024
1
September, 2022
Software used
4
macs
Lab
3
Kyle Gaulton, UCSD
1
AMP-T2D consortium
Project
2
AMP
2
T1D
RFA
2
AMP
2
T1D
assembly!
GRCh38
biosample_term_name!
type I muscle cell
Showing 4 of 4 results
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Download
FileSet
DSR025RWZ
released
Annotation file set
: Accessible chromatin from snATAC-seq of delta cells from human pancreatic islet samples
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR821QOK
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of SSTlow_delta
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR247PPG
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of SSThigh_delta
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR119NFC
released
Annotation file set
: pancreatic delta cell accessible chromatin annotation from snATAC
Lab:
Kyle Gaulton, UCSD
Project:
AMP