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Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
1
target gene predictions
1
variant allelic effects
Annotation Category
2
cis-regulatory elements
Annotation type Category
4
DNase-seq
2
snATAC-seq
1
ATAC-seq
Available data
2
bed bed3+
1
bam
1
bed gappedPeak
1
bigBed narrowPeak
1
bigWig
1
xls
File set status
2
released
Genome assembly (visualization)
2
hg19
Organism
2
Homo sapiens
Biosample type
2
primary cell
Biosample term
3
endothelial cell
3
smooth muscle cell
2
fibroblast
2
leukocyte
2
mesenchymal stem cell
2
pancreatic alpha cell
2
pancreatic beta cell
2
pancreatic delta cell
2
skeletal muscle fiber
2
skeletal muscle satellite cell
2
type I muscle cell
2
type II muscle cell
1
T cell
1
adipocyte
1
glial cell
1
kidney distal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
neural cell
1
pancreatic acinar cell
1
pancreatic ductal cell
1
pancreatic endothelial cell
1
pancreatic immune cell
1
pancreatic polypeptide-secreting cell
1
pancreatic stellate cell
1
proximal epiphysis of femur
1
proximal tubule cells with injury markers
Organ
2
epithelium
2
pancreas
Life stage
1
adult
1
unknown
Date released
1
February, 2024
1
September, 2022
Software used
2
macs
Lab
1
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Project
2
AMP
2
T1D
1
ENCODE
RFA
2
AMP
biosample_term_name!
parietal epithelial cell
Showing 2 of 2 results
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Download
FileSet
DSR025RWZ
released
Annotation file set
: Accessible chromatin from snATAC-seq of delta cells from human pancreatic islet samples
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR119NFC
released
Annotation file set
: pancreatic delta cell accessible chromatin annotation from snATAC
Lab:
Kyle Gaulton, UCSD
Project:
AMP