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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
5
accessible chromatin
3
target gene predictions
1
variant allelic effects
Annotation Category
5
cis-regulatory elements
Annotation type Category
5
snATAC-seq
4
DNase-seq
1
ATAC-seq
Available data
5
bed bed3+
4
bigWig
1
bam
1
bed gappedPeak
1
bigBed narrowPeak
1
xls
File set status
5
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
5
primary cell
Biosample term
16
fibroblast
14
endothelial cell
12
excitatory neuron
12
macrophage
10
pericyte cell
9
smooth muscle cell
7
astrocyte
6
T cell
6
pancreatic alpha cell
6
pancreatic beta cell
5
erythroblast
5
inhibitory neuron
5
pancreatic acinar cell
5
pancreatic delta cell
5
skeletal muscle fiber
5
skeletal muscle satellite cell
4
B cell
4
pancreatic ductal cell
4
type II pneumocyte
3
colon epithelial cell
3
cortical cell of adrenal gland
3
endothelial cell of lymphatic vessel
3
enterocyte
3
type I muscle cell
3
type I pneumocyte
3
type II muscle cell
2
CD8-positive, alpha-beta T cell
2
Muller cell
2
adipocyte
2
basal cell
2
blood vessel smooth muscle cell
2
capillary endothelial cell
2
ciliated cell
2
club cell
2
endocardial cell
2
endothelial cell of hepatic sinusoid
2
enteric neuron
2
enteric smooth muscle cell
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
fibroblast of cardiac tissue
2
gabaergic neuron
2
glial cell
2
glutamatergic neuron
2
keratinocyte
2
leukocyte
2
luminal epithelial cell of mammary gland
2
megakaryocyte
2
memory B cell
2
mesangial cell
2
mesenchymal stem cell
2
mesothelial cell
2
natural killer cell
2
oligodendrocyte precursor cell
2
pancreatic polypeptide-secreting cell
2
pancreatic stellate cell
2
schwann cell
2
smooth muscle cell of the esophagus
1
CD4-positive, alpha-beta T cell
1
activated CD4-positive, alpha-beta T cell
1
activated CD8-positive, alpha-beta T cell
1
alveolar macrophage
1
basal cell of epidermis
1
cardiac endothelial cell
1
cholangiocyte
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
1
colon goblet cell
1
conventional dendritic cell
1
eccrine cell
1
endothelial cell of artery
1
enterochromaffin-like cell
1
enterocyte of epithelium of small intestine
1
enteroendocrine cell
1
erythrocyte
1
extravillous trophoblast
1
fetal thymocyte
1
foveolar cell of stomach
1
gastric goblet cell
goblet cell
1
granular cell of epidermis
1
hepatic stellate cell
1
hepatoblast
1
hepatocyte
1
intestinal tuft cell
1
islet of Langerhans
1
kidney distal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
lung neuroendocrine cell
1
luteal cell
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
mammary gland epithelial cell
1
mast cell
1
mature NK T cell
1
melanocyte
1
metanephros
1
microglial cell
1
monocyte
1
myoepithelial cell
1
myofibroblast cell
1
naive B cell
1
naive t cell
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
naive thymus-derived CD8-positive, alpha-beta T cell
1
natural killer cell mediated cytotoxicity
1
neural cell
1
neuroendocrine cell
1
neuron
1
non keratinizing barrier epithelial cell
1
non-classical monocyte
1
oligodendrocyte
1
pancreatic endothelial cell
1
pancreatic immune cell
1
paneth cell
1
parietal cell
1
parietal epithelial cell
1
peptic cell
1
peripheral neuron
1
photoreceptor cell
1
placental hematopoietic stem cell
1
placental villus capillary endothelial cell
1
plasma cell
1
plasmacytoid dendritic cell
1
proximal epiphysis of femur
1
proximal tubule cells with injury markers
1
regular atrial cardiac myocyte
1
regulatory T cell
1
respiratory goblet cell
1
retinal bipolar neuron
1
retinal pigment epithelial cell
1
skeletal muscle fibroblast
1
skin fibroblast
1
small intestine goblet cell
1
stellate neuron
1
stomach neuroendocrine cell
1
stromal cell
1
sympathetic neuron
1
thyroid follicular cell
1
trophoblast giant cell
1
type I cell of adrenal cortex
1
type II cell of adrenal cortex
1
ureteric bud
1
uterine smooth muscle cell
1
ventricular cardiac muscle cell
Organ
5
epithelium
5
pancreas
Life stage
1
adult
1
unknown
Date released
2
January, 2021
1
February, 2024
1
November, 2021
1
September, 2022
Software used
5
macs
Lab
3
Kyle Gaulton, UCSD
1
AMP-T2D consortium
1
Bing Ren, UCSD
Project
2
AMP
2
T1D
1
ENCODE
RFA
2
AMP
2
T1D
1
ENCODE3
biosample_term_name!
goblet cell
macrophage(CL:0000235) and neutrophil(CL:0000775)
Showing 5 of 5 results
table-tab-icon
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Download
FileSet
DSR025RWZ
released
Annotation file set
: Accessible chromatin from snATAC-seq of delta cells from human pancreatic islet samples
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR181PDQ
released
Annotation file set
: Accessible chromatin annotation of Pancreatic Delta,Gamma cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR821QOK
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of SSTlow_delta
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR247PPG
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of SSThigh_delta
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR119NFC
released
Annotation file set
: pancreatic delta cell accessible chromatin annotation from snATAC
Lab:
Kyle Gaulton, UCSD
Project:
AMP