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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
16
gene expression
6
accessible chromatin
6
candidate regulatory elements
3
target gene predictions
2
binding sites
2
variant allelic effects
1
caQTL
1
eQTL
1
histone modifications
Annotation Category
6
cis-regulatory elements
Annotation type Category
3
ATAC-seq
2
snATAC-seq
1
DNase-seq
Available data
6
bed bed3+
4
bigWig
File set status
6
released
Genome assembly (visualization)
17
hg19
GRCh38
Organism
4
Homo sapiens
Biosample type
6
primary cell
Biosample term
4
glutamatergic neuron
4
monocyte
4
regulatory T cell
3
B cell
3
T-helper 1 cell
3
endothelial cell
2
CD8-positive, alpha-beta T cell
2
T follicular helper cell
2
T-helper 17 cell
2
T-helper 2 cell
2
acute myeloid leukemia cell
2
aortic endothelial cell
2
bone marrow cell
2
capillary endothelial cell
2
central memory CD8-positive, alpha-beta T cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
extracellular matrix secreting cell
2
gamma-delta T cell
2
glomerular visceral epithelial cell
2
leukocyte
2
mature natural killer cell
2
memory B cell
2
memory T cell
2
memory regulatory T cell
2
mesenchymal stem cell
2
naive B cell
2
naive regulatory T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
natural killer cell
2
osteoblast
2
pancreatic alpha cell
2
pancreatic beta cell
2
pancreatic delta cell
2
pancreatic ductal cell
2
skeletal muscle fiber
2
skeletal muscle myoblast
2
skeletal muscle satellite cell
2
smooth muscle cell
2
type I muscle cell
2
type II muscle cell
1
B-Lymphocytes
1
B-lymphocyte
1
CD1c-positive myeloid dendritic cell
1
CD4-Positive T-Lymphocytes
1
Glioblastoma
1
Ishikawa
1
T cell
1
Th1 cell
1
Th17 cell
1
Th2 cell
1
adipocyte
1
aortic adventitial fibroblast
1
basal cell
1
bronchial epithelial cell
1
ciliated cell
1
club cell
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
endothelial cell of artery
1
endothelial cell of lymphatic vessel
1
endothelial cell of umbilical vein
1
erythrocyte
1
erythroid cell
1
fibroblast of mammary gland
1
fibroblast of peridontal ligament
1
fibroblast of pulmonary artery
1
fibroblast of villous mesenchyme
1
foreskin fibroblast
1
gabaergic neuron
1
glial cell
1
glomerular endothelial cell
1
hepatic stellate cell
1
hepatocyte
1
immature natural killer cell
1
iris pigment epithelial cell
1
kidney distal convoluted tubule epithelial cell
1
kidney glomerular epithelial cell
1
kidney interstitial cell
1
kidney loop of Henle epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
kidney tubule cell
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
mammary epithelial cell
1
microglial cell/astrocyte
1
myeloid dendritic cell
1
myofibroblast cell
1
neoplastic cell
1
neural cell
1
neuroendocrine cell
1
neuron
1
non-neuronal cell
1
non-pigmented ciliary epithelial cell
1
oligodendrocyte
1
pancreatic acinar cell
1
pancreatic endothelial cell
1
pancreatic immune cell
1
pancreatic polypeptide-secreting cell
1
pancreatic stellate cell
1
pericyte cell
1
peripheral blood stem cell
1
plasma cell
1
plasmacytoid dendritic cell
1
preadipocyte
1
primordial germ cell
1
proximal tubule cells with injury markers
1
pulmonary artery endothelial cell
1
pulmonary interstitial fibroblast
1
renal cortical epithelial cell
1
renal epithelial cell
1
renal intercalated cell
1
renal principal cell
1
retinal pigment epithelial cell
1
skin fibroblast
1
somatic gonadal cell
1
tracheal epithelial cell
1
trophoblast cell
1
type I pneumocyte
1
type II pneumocyte
Organ
3
epithelium
Life stage
1
adult
1
unknown
Date released
2
May, 2020
1
August, 2021
1
February, 2024
1
June, 2020
1
May, 2022
Software used
4
macs
Lab
4
AMP-T2D consortium
1
Katalin Susztak, Upenn
1
Stephen Parker, UMich
Project
6
AMP
T1D
RFA
4
AMP
2
AMP2
assembly!
GRCh38
award.project!
T1D
Showing 6 of 6 results
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Download
FileSet
DSR897TMQ
released
Annotation file set
: Accessible chromatin from snATAC-seq of endothelial cell from human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR493PXL
released
Annotation file set
: Accessible chromatin from Katalin Susztak 75kidney Project of Endothelial cells
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR264NGG
released
Annotation file set
: Cell type chromatin broad peaks and bw of endothelial cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR397WHI
released
Annotation file set
: Accessible chromatin annotation for Blood CD4+ Th1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR166BDB
released
Annotation file set
: GSE118189 ATACseq accessible chromatin of normal T-helper 1 cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR946QWR
released
Annotation file set
: GSE118189 ATACseq accessible chromatin of LPS-stimulated T-helper 1 cell
Lab:
AMP-T2D consortium
Project:
AMP