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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
36
candidate regulatory elements
32
histone modifications
18
target gene predictions
10
gene expression
5
accessible chromatin
1
binding sites
1
chromatin state
1
eQTL
1
variant allelic effects
Annotation Category
5
cis-regulatory elements
Annotation type Category
2
ATAC-seq
2
DNase-seq
1
snATAC-seq
Available data
5
bed bed3+
3
bigWig
File set status
5
released
Genome assembly (visualization)
15
hg19
GRCh38
Organism
3
Homo sapiens
Biosample type
3
primary cell
1
in vitro differentiated cells
1
tissue
Biosample term
7
EndoC_BH1
6
SGBS preadipocytes
6
embryonic stem cell
5
B cell
5
adipocyte
5
chondrocyte
5
monocyte
5
regulatory T cell
4
CD8-positive, alpha-beta T cell
4
endothelial cell
4
glutamatergic neuron
4
natural killer cell
4
pancreatic alpha cell
4
pancreatic beta cell
4
pancreatic delta cell
3
T-helper 1 cell
3
macrophage
3
memory B cell
3
mesenchymal stem cell
3
naive B cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
pancreatic ductal cell
3
stomach
2
Rh-4 cell
2
T cell
2
T follicular helper cell
2
T-helper 17 cell
2
T-helper 2 cell
2
acute myeloid leukemia cell
2
adipose tissue
2
adipose-derived stem cell
2
aortic endothelial cell
2
bone marrow cell
2
capillary endothelial cell
2
central memory CD8-positive, alpha-beta T cell
2
differentiating adipose-derived stem cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
erythroid cell
2
extracellular matrix secreting cell
2
fibroblast of cardiac tissue
2
gamma-delta T cell
2
glomerular visceral epithelial cell
2
heart
2
islet of Langerhans
2
leukocyte
2
liver
2
mature natural killer cell
2
memory T cell
2
memory regulatory T cell
2
naive regulatory T cell
2
osteoblast
2
pancreas
2
pancreatic acinar cell
2
pancreatic polypeptide-secreting cell
2
pancreatic stellate cell
2
plasmacytoid dendritic cell
2
skeletal muscle fiber
2
skeletal muscle myoblast
2
skeletal muscle satellite cell
2
skin fibroblast
2
smooth muscle cell
2
spinal cord
2
type I muscle cell
2
type II muscle cell
1
786-O cell
1
A-673 cell
1
A172
1
A549
1
ACHN
1
AG04449 cell
1
AG04450 cell
1
AG08396 cell
1
AG09309 cell
1
AG09319 cell
1
AG10803 cell
1
Ammon's horn
1
B-Lymphocytes
1
B-lymphocyte
1
BE(2)-C
1
BJ cell
1
CD1c-positive myeloid dendritic cell
1
CD4-Positive T-Lymphocytes
1
CD4-positive helper T cell
1
CMK
1
COLO-829 cell
1
COLO205
1
Caco-2 cell
1
Caki2
1
D341 Med cell
1
DG-75 cell
1
Daoy
1
ECC-1
1
G-401 cell
1
GM03348
1
GM04503
1
GM04504
1
GM06990
1
GM10248
1
GM10266
1
GM12864
1
GM12865
1
GM12878
1
GM13976
1
GM13977
1
GM18507
1
GM19240
1
GM20000
1
GM23248
1
GP5d
1
Glioblastoma
1
H1-hESC
1
H4
1
H7-hESC
1
HAC cell
1
HAP-1
1
HBMEC cell
1
HCT-116 cell
1
HEK293
1
HGF
1
HL-60
1
HT-29
1
HUES6
1
HUES8
1
HeLa cell
1
HepG2
1
Hodgkin lymphoma cell line
1
HuH-7
1
HuTu-80 cell
1
IMR-90
1
Ishikawa
1
Jurkat
1
K562
1
KARPAS-422 cell
1
KBM-7
1
Kasumi-1
1
L-1236 cell
1
L-428 cell
1
L1-S8
1
L1-S8R
1
LHCN-M2
1
LNCAP
1
LoVo cell
1
M059J
1
MCF-7
1
MCF10A-Er-Src cell
1
MDA-MB-231 cell
1
MG63
1
MM.1S
1
MOLM-13 cell
1
Myoblasts
1
NAMALWA cell
1
NB-4 cell
1
NCCIT cell
1
NCI-H226 cell
1
NHBE cell
1
NHDF cell
1
NHEK
1
NT2-D1 cell
1
Normal Human Astrocytes
1
OCI-AML3
1
OCI-LY7
1
PA-TU-8988T cell
1
PANC-1 cell
1
PC-3
1
PC-9
1
Peyer's patch
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
RCC 7860
1
REH cell
1
RKO
1
RPMI7951
1
RPMI8226
1
RS4-11 cell
1
RWPE1
1
Rh-5 cell
1
Rhabdomyosarcoma
1
SAEC
1
SJCRH30
1
SJSA1
1
SK-CO-1
1
SK-N-DZ
1
SK-N-MC
1
SK-N-SH_RA
1
SKH1-Hr hr
1
SKMC
1
SUDHL5
1
SW1116
1
SW480
1
Saos-2 cell
1
T-47D cell
1
T84
1
Th1 cell
1
Th17 cell
1
Th2 cell
1
U-266 cell
1
U-87 MG
1
U2OS
1
U937
Organ
1
kidney
Date released
2
June, 2020
2
May, 2020
1
January, 2021
Software used
3
macs
Lab
4
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Project
4
AMP
1
T1D
RFA
4
AMP
1
T1D
assembly!
GRCh38
month_released!
February, 2020
organ_slims!
eye
Showing 5 of 5 results
table-tab-icon
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Download
FileSet
DSR920NWL
released
Annotation file set
: Accessible chromatin annotation for Kidney Fetal kidney from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR589PDF
released
Annotation file set
: Accessible chromatin annotation for Blood CD8+ from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR805RPA
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of pancreatic_CD8_T
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR590HEP
released
Annotation file set
: GSE118189 ATACseq accessible chromatin of normal CD8-positive, alpha-beta T cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR935PWD
released
Annotation file set
: GSE118189 ATACseq accessible chromatin of LPS-stimulated CD8-positive, alpha-beta T cell
Lab:
AMP-T2D consortium
Project:
AMP