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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
accessible chromatin
Annotation Category
3
cis-regulatory elements
Annotation type Category
3
snATAC-seq
Available data
3
bed bed3+
3
bigWig
File set status
3
released
Genome assembly (visualization)
8
hg19
3
GRCh38
Organism
3
Homo sapiens
Biosample type
3
primary cell
Biosample term
16
fibroblast
13
excitatory neuron
13
monocyte
12
endothelial cell
10
macrophage
10
neural progenitor cell
9
kidney
9
pericyte cell
8
astrocyte
7
hepatocyte
7
smooth muscle cell
6
endothelial cell of hepatic sinusoid
5
T cell
5
erythroblast
5
inhibitory neuron
5
islet of Langerhans
5
pancreatic acinar cell
5
pancreatic ductal cell
4
pancreatic beta cell
3
cardiac fibroblast
3
B cell
3
colon epithelial cell
3
coronary artery
3
cortical cell of adrenal gland
3
enterocyte
3
heart
3
heart left ventricle
3
osteoblast
3
pancreas
3
pancreatic alpha cell
3
skeletal muscle fiber
3
skeletal muscle satellite cell
3
type II pneumocyte
2
Muller cell
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
blood vessel smooth muscle cell
2
cardiac muscle cell
2
endocardial cell
2
endothelial cell of lymphatic vessel
2
enteric neuron
2
enteric smooth muscle cell
2
fetal cardiomyocyte
2
fibroblast of cardiac tissue
2
gabaergic neuron
2
glutamatergic neuron
2
hepatic stellate cell
2
keratinocyte
2
liver
2
luminal epithelial cell of mammary gland
2
mesangial cell
2
mesothelial cell
2
oligodendrocyte precursor cell
2
omental fat pad
2
pancreatic stellate cell
2
retinal pigment epithelial cell
2
right atrium auricular region
2
schwann cell
2
smooth muscle cell of the esophagus
2
subcutaneous adipose tissue
2
tibial artery
2
tibial nerve
2
type I pneumocyte
1
hindlimb muscle
1
Ammon's horn
1
CD4-positive helper T cell
1
CD4-positive, alpha-beta T cell
1
CD8-positive, alpha-beta T cell
1
EndoC_BH1
1
HepG2
1
Schwann cell
1
adipocyte
1
alveolar macrophage
1
ascending aorta
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
basal cell
1
basal cell of epidermis
1
brain
1
brain microvascular endothelial cell
1
brain pericyte
1
cardiac endothelial cell
1
cardiac precursors
1
caudate nucleus
1
cerebellar cortex
1
cerebellum
1
cholangiocyte
1
choroid plexus epithelial cell
1
chromaffin cell of adrenal gland
1
ciliated cell
1
ciliated epithelial cell
1
club cell
1
colon goblet cell
1
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
eccrine cell
1
endothelial cell of umbilical vein
1
enterochromaffin-like cell
1
enterocyte of epithelium of small intestine
1
enteroendocrine cell
1
epithelial cell of proximal tubule
1
extravillous trophoblast
1
fetal heart
1
fetal thymocyte
1
forelimb muscle
1
foveolar cell of stomach
1
frontal cortex
1
gastric goblet cell
1
glial cell
1
globus pallidus
1
glomerular endothelial cell
1
glomerular visceral epithelial cell
1
goblet cell
1
granular cell of epidermis
1
heart right ventricle
1
hepatoblast
1
hippocampal neuron
1
intestinal tuft cell
1
kidney capillary endothelial cell
1
kidney epithelial cell
1
kidney glomerular epithelial cell
1
kidney tubule cell
1
left cardiac atrium
1
left renal cortex interstitium
1
left renal pelvis
1
lower motor neuron
1
lung neuroendocrine cell
1
luteal cell
1
mammary gland epithelial cell
1
mast cell
1
mature NK T cell
1
medulla oblongata
1
megakaryocyte
1
melanocyte
1
memory B cell
1
metanephros
1
microglial cell
1
midbrain
1
middle frontal gyrus
1
muscle of arm
1
muscle of leg
1
myoepithelial cell
1
naive t cell
1
neuron
1
non keratinizing barrier epithelial cell
1
occipital lobe
1
oligodendrocyte
1
pancreatic A cell
1
pancreatic D cell
1
pancreatic PP cell
1
pancreatic delta cell
1
paneth cell
1
parietal cell
1
parietal epithelial cell
peptic cell
1
peripheral neuron
1
photoreceptor cell
1
placental hematopoietic stem cell
1
placental villus capillary endothelial cell
1
plasma cell
1
pons
1
proximal epiphysis
1
proximal epiphysis of femur
1
proximal epiphysis of humerus
1
proximal epiphysis of tibia
1
putamen
1
regular atrial cardiac myocyte
1
renal cortex interstitium
1
renal cortical epithelial cell
1
renal pelvis
1
respiratory goblet cell
1
retina
1
retinal bipolar neuron
1
right kidney
1
right renal cortex interstitium
1
right renal pelvis
1
skeletal muscle cell
1
skeletal muscle fibroblast
1
skin fibroblast
1
small intestine goblet cell
1
smooth muscle cell of the brain vasculature
1
smooth muscle cell of the coronary artery
1
spleen
1
stomach neuroendocrine cell
1
stromal cell
1
superior temporal gyrus
1
sympathetic neuron
1
thoracic aorta
1
thyroid follicular cell
1
tissue-resident macrophage
1
trophoblast giant cell
1
type B pancreatic cell
1
type I cell of adrenal cortex
1
type I muscle cell
1
type II cell of adrenal cortex
1
type II muscle cell
1
ureteric bud
1
uterine smooth muscle cell
1
ventricular cardiac muscle cell
Date released
3
November, 2021
Software used
3
macs
Lab
3
Bing Ren, UCSD
Project
3
ENCODE
RFA
3
ENCODE3
biosample_term_name!
Pancreatic progenitors (progenitor cell of endocrine pancreas)
peptic cell
Showing 3 of 3 results
table-tab-icon
matrix-icon
Download
FileSet
DSR995HIR
released
Annotation file set
: Accessible chromatin annotation of Fetal B Lymphocyte 3 (NPY+) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR143LGZ
released
Annotation file set
: Accessible chromatin annotation of Fetal B Lymphocyte 2 (CXCR5+) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR114OHW
released
Annotation file set
: Accessible chromatin annotation of Fetal B Lymphocyte 1 (SPIB+) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE