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Citing CMDGA
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Annotation type
8
target gene predictions
7
candidate regulatory elements
4
chromatin state
3
accessible chromatin
1
caQTL
1
eQTL
1
gene expression
Annotation Category
3
cis-regulatory elements
Annotation type Category
2
snATAC-seq
1
DNase-seq
Available data
3
bed bed3+
1
bigWig
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
2
primary cell
1
tissue
Biosample term
2
muscle of leg
2
skeletal muscle fiber
2
skeletal muscle satellite cell
2
type I muscle cell
2
type II muscle cell
1
hindlimb muscle
1
LHCN-M2
1
SJCRH30
1
esophagus muscularis mucosa
1
forelimb muscle
1
gastrocnemius medialis
1
muscle of arm
1
psoas muscle
1
skeletal muscle cell
Organ
3
musculature of body
Life stage
1
unknown
Date released
1
February, 2024
1
June, 2020
1
May, 2022
Software used
3
macs
Lab
2
AMP-T2D consortium
1
Stephen Parker, UMich
Project
3
AMP
ENCODE
RFA
2
AMP
1
AMP2
award.project!
ENCODE
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FileSet
DSR704QRW
released
Annotation file set
: Accessible chromatin from snATAC-seq of type I muscle cell from human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR209HNE
released
Annotation file set
: Cell type chromatin broad peaks and bw of type I muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR404JHM
released
Annotation file set
: Accessible chromatin annotation for Muscle Muscles from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP