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Schema
Citing CMDGA
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Annotation type
2
accessible chromatin
1
target gene predictions
Annotation Category
2
cis-regulatory elements
Annotation type Category
2
snATAC-seq
Available data
2
bed bed3+
2
bigWig
File set status
2
released
Genome assembly (visualization)
2
hg19
Organism
2
Homo sapiens
Biosample type
2
primary cell
Biosample term
2
capillary endothelial cell
2
extracellular matrix secreting cell
2
macrophage
2
natural killer cell
2
pancreatic alpha cell
2
pancreatic beta cell
2
pancreatic delta cell
1
B cell
1
CD4-positive helper T cell
1
CD8-positive, alpha-beta T cell
1
T cell
1
activated CD4-positive, alpha-beta T cell
1
activated CD8-positive, alpha-beta T cell
1
basal cell
1
ciliated cell
1
club cell
1
conventional dendritic cell
1
endothelial cell
1
endothelial cell of artery
1
endothelial cell of lymphatic vessel
1
erythrocyte
1
megakaryocyte
1
memory B cell
1
monocyte
1
myofibroblast cell
1
naive B cell
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
naive thymus-derived CD8-positive, alpha-beta T cell
1
natural killer cell mediated cytotoxicity
1
neuroendocrine cell
1
non-classical monocyte
1
pancreatic acinar cell
1
pancreatic ductal cell
1
pancreatic polypeptide-secreting cell
1
pancreatic stellate cell
1
pericyte cell
1
plasmacytoid dendritic cell
1
regulatory T cell
1
stellate neuron
1
type I pneumocyte
1
type II pneumocyte
Organ
2
epithelium
1
lung
Date released
1
April, 2020
1
January, 2021
Software used
1
macs
Lab
1
Kyle Gaulton, UCSD
1
Xin Sun, UCSD
Project
ENCODE
AMP
1
LungMap
1
T1D
RFA
1
LungMap2
1
T1D
award.project!
AMP
ENCODE
biosample_term_name!
kidney glomerular epithelial cell
Showing 2 of 2 results
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Download
FileSet
DSR731YZV
released
Annotation file set
: ATAC-seq peaks in AT2 cells from lung snATAC-seq
Lab:
Xin Sun, UCSD
Project:
LungMap
FileSet
DSR579LZJ
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of endothelial
Lab:
Kyle Gaulton, UCSD
Project:
T1D