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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
30
candidate regulatory elements
19
chromatin state
18
target gene predictions
11
gene expression
8
accessible chromatin
4
histone modifications
3
binding sites
3
eQTL
3
variant allelic effects
2
caQTL
Annotation Category
8
cis-regulatory elements
Annotation type Category
4
snATAC-seq
2
DNase-seq
1
ATAC-seq
Available data
8
bed bed3+
5
bigWig
File set status
8
released
Genome assembly (visualization)
8
hg19
3
GRCh38
Organism
8
Homo sapiens
Biosample type
5
primary cell
3
tissue
Biosample term
23
retina
20
pigmented layer of retina
18
monocyte
10
kidney
10
neural progenitor cell
8
EndoC_BH1
8
retinal pigment epithelial cell
7
hepatocyte
6
SGBS preadipocytes
6
embryonic stem cell
6
endothelial cell
6
islet of Langerhans
6
pancreatic beta cell
6
pancreatic ductal cell
5
B cell
5
adipocyte
5
chondrocyte
5
heart
5
osteoblast
5
pancreas
5
pancreatic alpha cell
5
regulatory T cell
4
CD8-positive, alpha-beta T cell
4
endothelial cell of hepatic sinusoid
4
glutamatergic neuron
4
liver
4
macrophage
4
natural killer cell
4
pancreatic acinar cell
4
pancreatic delta cell
4
pancreatic stellate cell
3
cardiac fibroblast
3
T cell
3
T-helper 1 cell
3
coronary artery
3
glomerular visceral epithelial cell
3
heart left ventricle
3
memory B cell
3
mesenchymal stem cell
3
naive B cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
right atrium auricular region
3
smooth muscle cell
3
stomach
3
tibial artery
3
tibial nerve
2
Ammon's horn
2
CD4-positive helper T cell
2
HepG2
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
Rh-4 cell
2
T follicular helper cell
2
T-helper 17 cell
2
T-helper 2 cell
2
acute myeloid leukemia cell
2
adipose tissue
2
adipose-derived stem cell
2
aortic endothelial cell
2
bone marrow cell
2
brain
2
brain pericyte
2
capillary endothelial cell
2
cardiac muscle cell
2
caudate nucleus
2
central memory CD8-positive, alpha-beta T cell
2
choroid plexus epithelial cell
2
differentiating adipose-derived stem cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
endothelial cell of umbilical vein
2
erythroid cell
2
extracellular matrix secreting cell
2
fibroblast
2
fibroblast of cardiac tissue
2
frontal cortex
2
gamma-delta T cell
2
globus pallidus
2
glomerular endothelial cell
2
hepatic stellate cell
2
kidney glomerular epithelial cell
2
kidney tubule cell
2
leukocyte
2
mature natural killer cell
2
medulla oblongata
2
memory T cell
2
memory regulatory T cell
2
midbrain
2
muscle of leg
2
naive regulatory T cell
2
occipital lobe
2
omental fat pad
2
pancreatic polypeptide-secreting cell
2
plasmacytoid dendritic cell
2
pons
2
putamen
2
renal cortical epithelial cell
2
renal pelvis
2
skeletal muscle fiber
2
skeletal muscle myoblast
2
skeletal muscle satellite cell
2
skin fibroblast
2
spinal cord
2
spleen
2
subcutaneous adipose tissue
2
superior temporal gyrus
2
type I muscle cell
2
type II muscle cell
1
hindlimb muscle
1
786-O cell
1
A-673 cell
1
A172
1
A549
1
ACHN
1
AG04449 cell
1
AG04450 cell
1
AG08396 cell
1
AG09309 cell
1
AG09319 cell
1
AG10803 cell
1
B-Lymphocytes
1
B-lymphocyte
1
BE(2)-C
1
BJ cell
1
CD1c-positive myeloid dendritic cell
1
CD4-Positive T-Lymphocytes
1
CMK
1
COLO-829 cell
1
COLO205
1
Caco-2 cell
1
Caki2
1
D341 Med cell
1
DG-75 cell
1
Daoy
1
ECC-1
1
G-401 cell
1
GM03348
1
GM04503
1
GM04504
1
GM06990
1
GM10248
1
GM10266
1
GM12864
1
GM12865
1
GM12878
1
GM13976
1
GM13977
1
GM18507
1
GM19240
1
GM20000
1
GM23248
1
GP5d
1
Glioblastoma
1
H1-hESC
1
H4
1
H7-hESC
1
HAC cell
1
HAP-1
HBMEC cell
1
HCT-116 cell
1
HEK293
1
HGF
1
HL-60
1
HT-29
1
HUES6
1
HUES8
1
HeLa cell
1
Hodgkin lymphoma cell line
1
HuH-7
1
HuTu-80 cell
1
IMR-90
1
Ishikawa
1
Jurkat
1
K562
1
KARPAS-422 cell
1
KBM-7
1
Kasumi-1
1
L-1236 cell
1
L-428 cell
1
L1-S8
1
L1-S8R
1
LHCN-M2
1
LNCAP
1
LoVo cell
1
M059J
1
MCF-7
1
MCF10A-Er-Src cell
1
MDA-MB-231 cell
1
MG63
1
MM.1S
1
MOLM-13 cell
1
Myoblasts
1
NAMALWA cell
1
NB-4 cell
1
NCCIT cell
1
NCI-H226 cell
1
NHBE cell
1
NHDF cell
1
NHEK
1
NT2-D1 cell
Organ
6
epithelium
2
brain
Life stage
2
adult
1
fetal
1
unknown
Date released
2
February, 2024
2
May, 2022
1
August, 2021
1
January, 2020
1
January, 2021
1
June, 2020
Software used
8
macs
Lab
3
AMP-T2D consortium
2
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
1
Katalin Susztak, Upenn
1
Stephen Parker, UMich
Project
ENCODE
7
AMP
1
T1D
RFA
4
AMP
3
AMP2
1
T1D
award.project!
ENCODE
biosample_term_name!
HBMEC cell
Showing 8 of 8 results
table-tab-icon
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Download
FileSet
DSR369PUU
released
Annotation file set
: accessible chromatin annotation from scATAC-seq of Endothelial
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR897TMQ
released
Annotation file set
: Accessible chromatin from snATAC-seq of endothelial cell from human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR426RPD
released
Annotation file set
: Accessible chromatin annotation of Endothelial cells from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR493PXL
released
Annotation file set
: Accessible chromatin from Katalin Susztak 75kidney Project of Endothelial cells
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR264NGG
released
Annotation file set
: Cell type chromatin broad peaks and bw of endothelial cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR147QJJ
released
Annotation file set
: Accessible chromatin annotation for Neural Fetal brain from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579LZJ
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of endothelial
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR271FEH
released
Annotation file set
: Accessible chromatin annotation of brain fetal from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP