Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
33
histone modifications
22
candidate regulatory elements
14
target gene predictions
11
chromatin state
7
eQTL
5
accessible chromatin
4
gene expression
2
binding sites
1
caQTL
1
differential activity
Annotation Category
5
cis-regulatory elements
Annotation type Category
5
ATAC-seq
Available data
5
bed bed3+
4
bigWig
File set status
5
released
Genome assembly (visualization)
5
hg19
2
GRCh38
Organism
3
Homo sapiens
Biosample type
3
tissue
2
primary cell
Biosample term
22
retina
20
pigmented layer of retina
15
monocyte
10
neural progenitor cell
9
kidney
8
EndoC_BH1
7
retinal pigment epithelial cell
6
embryonic stem cell
6
hepatocyte
5
SGBS preadipocytes
5
chondrocyte
5
endothelial cell
5
islet of Langerhans
4
adipocyte
4
endothelial cell of hepatic sinusoid
4
glutamatergic neuron
4
pancreatic beta cell
4
pancreatic ductal cell
3
cardiac fibroblast
3
coronary artery
3
heart
3
heart left ventricle
3
liver
3
osteoblast
3
pancreas
3
pancreatic acinar cell
3
pancreatic alpha cell
3
pancreatic stellate cell
3
smooth muscle cell
2
B cell
2
CD8-positive, alpha-beta T cell
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
T follicular helper cell
2
T-helper 1 cell
2
T-helper 17 cell
2
T-helper 2 cell
2
adipose tissue
2
adipose-derived stem cell
2
aortic endothelial cell
2
cardiac muscle cell
2
central memory CD8-positive, alpha-beta T cell
2
differentiating adipose-derived stem cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
fibroblast
2
gamma-delta T cell
2
glomerular visceral epithelial cell
2
leukocyte
2
mature natural killer cell
2
memory B cell
2
memory T cell
2
memory regulatory T cell
2
mesenchymal stem cell
2
naive B cell
2
naive regulatory T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
omental fat pad
2
pancreatic delta cell
2
regulatory T cell
2
right atrium auricular region
2
skeletal muscle fiber
2
skeletal muscle satellite cell
2
subcutaneous adipose tissue
2
tibial artery
2
tibial nerve
2
type I muscle cell
2
type II muscle cell
1
hindlimb muscle
1
Ammon's horn
1
HepG2
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
Schwann cell
1
T cell
1
ascending aorta
1
astrocyte
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
brain
1
brain microvascular endothelial cell
1
brain pericyte
1
cardiac precursors
1
caudate nucleus
1
cerebellar cortex
1
cerebellum
1
choroid plexus epithelial cell
1
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
endothelial cell of umbilical vein
1
epithelial cell of proximal tubule
1
excitatory neuron
1
fetal heart
1
forelimb muscle
1
frontal cortex
1
gabaergic neuron
1
glial cell
1
globus pallidus
1
glomerular endothelial cell
1
heart right ventricle
1
hepatic stellate cell
1
hippocampal neuron
1
immature natural killer cell
1
kidney capillary endothelial cell
1
kidney distal convoluted tubule epithelial cell
1
kidney epithelial cell
1
kidney glomerular epithelial cell
1
kidney interstitial cell
1
kidney loop of Henle epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
kidney tubule cell
1
left cardiac atrium
1
left renal cortex interstitium
1
left renal pelvis
1
lower motor neuron
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
medulla oblongata
1
microglial cell/astrocyte
1
midbrain
1
middle frontal gyrus
1
muscle of arm
1
muscle of leg
1
myeloid dendritic cell
1
natural killer cell
1
neural cell
1
neuron
1
neuron cell of Hypothalamus (neuron)
1
non-neuronal cell
1
occipital lobe
1
oligodendrocyte
1
pancreatic A cell
1
pancreatic D cell
1
pancreatic PP cell
1
pancreatic endothelial cell
1
pancreatic immune cell
1
pancreatic polypeptide-secreting cell
1
plasma cell
1
plasmacytoid dendritic cell
1
pons
1
preadipocyte
1
proximal epiphysis
1
proximal epiphysis of femur
1
proximal epiphysis of humerus
1
proximal epiphysis of tibia
1
proximal tubule cells with injury markers
1
putamen
1
renal cortex interstitium
1
renal cortical epithelial cell
1
renal intercalated cell
1
renal pelvis
1
renal principal cell
1
right kidney
1
right renal cortex interstitium
1
right renal pelvis
1
skeletal muscle cell
1
skeletal muscle myoblast
1
smooth muscle cell of the brain vasculature
1
smooth muscle cell of the coronary artery
1
spleen
1
superior temporal gyrus
1
thoracic aorta
1
tissue-resident macrophage
1
type B pancreatic cell
Organ
3
liver
Life stage
1
adult
1
embryonic
Date released
June, 2020
2
May, 2020
1
May, 2022
1
November, 2019
1
September, 2018
Software used
3
macs
Lab
4
AMP-T2D consortium
1
Karen Mohlke, UNC
Project
5
AMP
1
ENCODE
1
T1D
RFA
5
AMP
month_released!
June, 2020
Showing 5 of 5 results
table-tab-icon
matrix-icon
Download
FileSet
DSR303OZW
released
Annotation file set
: Accessible chromatin annotation(consensus peaks) of liver tissue from pilot study(AJHG2021) in Mohlke Lab
Lab:
Karen Mohlke, UNC
Project:
AMP
FileSet
DSR590HEP
released
Annotation file set
: GSE118189 ATACseq accessible chromatin of normal CD8-positive, alpha-beta T cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR935PWD
released
Annotation file set
: GSE118189 ATACseq accessible chromatin of LPS-stimulated CD8-positive, alpha-beta T cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR815GWW
released
Annotation file set
: Accessible chromatin annotation of embryonic liver
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR027RWS
released
Annotation file set
: ATAC-seq sites in right lobe of liver for 1 sample from ENCODE
Lab:
AMP-T2D consortium
Project:
AMP