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Schema
Citing CMDGA
Clear Filters
Annotation type
7
chromatin state
7
target gene predictions
6
accessible chromatin
6
candidate regulatory elements
2
gene expression
1
binding sites
1
histone modifications
1
variant allelic effects
Annotation Category
6
cis-regulatory elements
Annotation type Category
3
ATAC-seq
2
DNase-seq
1
snATAC-seq
Available data
6
bed bed3+
1
bigWig
File set status
6
released
Genome assembly (visualization)
6
hg19
Organism
6
Homo sapiens
Biosample type
4
in vitro differentiated cells
1
cell line
1
primary cell
Biosample term
5
adipocyte
5
chondrocyte
5
osteoblast
3
cardiac fibroblast
3
mesenchymal stem cell
3
pancreatic stellate cell
2
adipose tissue
2
brain pericyte
2
fibroblast
2
fibroblast of cardiac tissue
2
hepatic stellate cell
2
omental fat pad
2
skin fibroblast
2
spinal cord
2
subcutaneous adipose tissue
1
GM23248
1
SGBS preadipocytes
1
adipose-derived mesenchymal stem cell
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
fibroblast of mammary gland
1
fibroblast of peridontal ligament
1
fibroblast of pulmonary artery
1
fibroblast of the conjunctiva
1
fibroblast of villous mesenchyme
1
foreskin fibroblast
1
preadipocyte
1
pulmonary interstitial fibroblast
Organ
6
connective tissue
1
eye
0
spinal cord
Date released
2
February, 2024
2
June, 2020
1
November, 2022
1
October, 2019
Software used
6
macs
Lab
5
AMP-T2D consortium
1
Stephen Parker, UMich
Project
6
AMP
1
ENCODE
RFA
5
AMP
1
AMP2
Showing 6 of 6 results
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FileSet
DSR654XDX
released
Annotation file set
: Open chromatin regions that exhibit differential accessibility in the lipid-challenged adipocytes
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR161NNW
released
Annotation file set
: Accessible chromatin of ATAC-seq in a human cell model of adipocytes day 14
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR083CQX
released
Annotation file set
: Cell type chromatin broad peaks and bw of adipocyte from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR782AET
released
Annotation file set
: Accessible chromatin annotation for Others HConF from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR073DMC
released
Annotation file set
: Accessible chromatin annotation for Adipocyte Adipocytes from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR645XXX
released
Annotation file set
: Adipocyte accessible chromatin annotation of overlapping ATAC-seq sites from 5 samples with most significant peak selected
Lab:
AMP-T2D consortium
Project:
AMP