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Schema
Citing CMDGA
Clear Filters
Annotation type
4
accessible chromatin
3
differential activity
3
gene expression
1
target gene predictions
1
variant allelic effects
Annotation Category
4
cis-regulatory elements
Annotation type Category
2
ATAC-seq
2
snATAC-seq
Available data
4
bed bed3+
3
bigWig
1
bam
1
bed gappedPeak
1
bigBed narrowPeak
1
xls
File set status
4
released
Genome assembly (visualization)
4
hg19
2
GRCh38
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
4
pancreatic beta cell
3
pancreatic alpha cell
3
pancreatic ductal cell
2
pancreatic acinar cell
2
pancreatic delta cell
1
pancreatic polypeptide-secreting cell
1
pancreatic stellate cell
1
primordial germ cell
1
trophoblast cell
Organ
4
epithelium
4
pancreas
0
embryo
Life stage
2
adult
1
newborn
1
unknown
Date released
2
October, 2019
1
February, 2024
1
September, 2022
Software used
4
macs
Lab
3
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Project
4
AMP
2
ENCODE
2
T1D
RFA
4
AMP
Showing 4 of 4 results
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Download
FileSet
DSR055KAB
released
Annotation file set
: Accessible chromatin from snATAC-seq of beta cells from human pancreatic islet samples
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR112LAM
released
Annotation file set
: Pancreatic beta cell accessible chromatin annotation of overlapping ATAC-seq sites from 2 children samples with most significant peak selected
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR616QUT
released
Annotation file set
: Pancreatic beta cell accessible chromatin annotation of overlapping ATAC-seq sites from 5 samples with most significant peak selected
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR373LDZ
released
Annotation file set
: pancreatic beta cell accessible chromatin annotation from snATAC
Lab:
Kyle Gaulton, UCSD
Project:
AMP