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Schema
Citing CMDGA
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Annotation type
2
accessible chromatin
2
candidate regulatory elements
2
chromatin state
1
gene expression
1
target gene predictions
Annotation Category
2
cis-regulatory elements
Annotation type Category
2
snATAC-seq
Available data
2
bed bed3+
2
bigWig
File set status
2
released
Genome assembly (visualization)
2
hg19
Organism
2
Homo sapiens
Biosample type
2
primary cell
Biosample term
18
monocyte
6
pancreatic beta cell
5
osteoblast
5
pancreatic alpha cell
5
regulatory T cell
4
glutamatergic neuron
4
pancreatic delta cell
4
pancreatic ductal cell
3
cardiac fibroblast
3
B cell
3
CD8-positive, alpha-beta T cell
3
T-helper 1 cell
3
memory B cell
3
naive B cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
natural killer cell
3
pancreatic acinar cell
2
T follicular helper cell
2
T-helper 17 cell
2
T-helper 2 cell
2
acute myeloid leukemia cell
2
aortic endothelial cell
2
bone marrow cell
2
capillary endothelial cell
2
central memory CD8-positive, alpha-beta T cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
endothelial cell
2
endothelial cell of umbilical vein
2
extracellular matrix secreting cell
2
gamma-delta T cell
2
glomerular endothelial cell
2
hepatic stellate cell
2
hepatocyte
2
kidney glomerular epithelial cell
2
kidney tubule cell
2
macrophage
2
mature natural killer cell
2
memory T cell
2
memory regulatory T cell
2
naive regulatory T cell
2
pancreatic polypeptide-secreting cell
2
pancreatic stellate cell
2
plasmacytoid dendritic cell
2
renal cortical epithelial cell
2
retinal pigment epithelial cell
2
skeletal muscle myoblast
1
B-Lymphocytes
1
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1
CD1c-positive myeloid dendritic cell
1
CD4-Positive T-Lymphocytes
1
CD4-positive helper T cell
1
Glioblastoma
1
Ishikawa
1
T cell
1
Th1 cell
1
Th17 cell
1
Th2 cell
1
activated CD4-positive, alpha-beta T cell
1
activated CD8-positive, alpha-beta T cell
1
aortic adventitial fibroblast
1
astrocyte
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
basal cell
1
brain microvascular endothelial cell
1
brain pericyte
1
bronchial epithelial cell
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
ciliated cell
1
club cell
1
conventional dendritic cell
1
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1
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1
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1
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1
erythrocyte
1
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1
fibroblast of mammary gland
1
fibroblast of peridontal ligament
1
fibroblast of pulmonary artery
1
fibroblast of villous mesenchyme
1
foreskin fibroblast
1
gabaergic neuron
1
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1
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1
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1
kidney capillary endothelial cell
1
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1
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1
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1
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1
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1
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1
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1
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1
naive thymus-derived CD4-positive, alpha-beta T cell
1
natural killer cell mediated cytotoxicity
1
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1
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1
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1
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1
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1
non-pigmented ciliary epithelial cell
1
oligodendrocyte
1
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1
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1
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1
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plasma cell
1
preadipocyte
1
primordial germ cell
1
pulmonary artery endothelial cell
1
pulmonary interstitial fibroblast
1
renal epithelial cell
1
skeletal muscle cell
1
skeletal muscle satellite cell
1
skin fibroblast
1
smooth muscle cell
1
smooth muscle cell of the brain vasculature
1
somatic gonadal cell
1
stellate neuron
1
tracheal epithelial cell
1
trophoblast cell
1
type I muscle cell
1
type I pneumocyte
1
type II muscle cell
1
type II pneumocyte
Organ
1
musculature of body
Life stage
1
unknown
Date released
November, 2021
1
April, 2020
1
May, 2022
Software used
1
macs
Lab
1
AMP-T2D consortium
1
Xin Sun, UCSD
Project
1
AMP
1
LungMap
RFA
1
AMP
AMP2
1
LungMap2
award.rfa!
AMP2
month_released!
November, 2021
Showing 2 of 2 results
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Download
FileSet
DSR534XMQ
released
Annotation file set
: Accessible chromatin from snATAC-seq of skeletal muscle satellite cell from human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR489CBX
released
Annotation file set
: ATAC-seq peaks in ciliated cells from lung snATAC-seq
Lab:
Xin Sun, UCSD
Project:
LungMap