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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
27
candidate regulatory elements
15
chromatin state
15
target gene predictions
10
gene expression
8
accessible chromatin
2
binding sites
2
caQTL
2
variant allelic effects
1
eQTL
1
histone modifications
Annotation Category
8
cis-regulatory elements
Annotation type Category
4
snATAC-seq
2
DNase-seq
1
ATAC-seq
Available data
8
bed bed3+
5
bigWig
File set status
8
released
Genome assembly (visualization)
8
hg19
3
GRCh38
Organism
8
Homo sapiens
Biosample type
5
primary cell
3
tissue
cell line
Biosample term
23
retina
20
pigmented layer of retina
18
monocyte
10
kidney
10
neural progenitor cell
8
retinal pigment epithelial cell
7
hepatocyte
6
embryonic stem cell
6
endothelial cell
6
islet of Langerhans
6
pancreatic beta cell
6
pancreatic ductal cell
5
B cell
5
SGBS preadipocytes
5
adipocyte
5
chondrocyte
5
heart
5
osteoblast
5
pancreas
5
pancreatic alpha cell
5
regulatory T cell
4
CD8-positive, alpha-beta T cell
4
endothelial cell of hepatic sinusoid
4
glutamatergic neuron
4
liver
4
natural killer cell
4
pancreatic acinar cell
4
pancreatic delta cell
4
pancreatic stellate cell
3
cardiac fibroblast
3
T cell
3
T-helper 1 cell
3
coronary artery
3
heart left ventricle
3
macrophage
3
memory B cell
3
mesenchymal stem cell
3
naive B cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
right atrium auricular region
3
smooth muscle cell
3
stomach
3
tibial artery
3
tibial nerve
2
Ammon's horn
2
CD4-positive helper T cell
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
T follicular helper cell
2
T-helper 17 cell
2
T-helper 2 cell
2
acute myeloid leukemia cell
2
adipose tissue
2
adipose-derived stem cell
2
aortic endothelial cell
2
bone marrow cell
2
brain
2
capillary endothelial cell
2
cardiac muscle cell
2
caudate nucleus
2
central memory CD8-positive, alpha-beta T cell
2
differentiating adipose-derived stem cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
endothelial cell of umbilical vein
2
erythroid cell
2
extracellular matrix secreting cell
2
fibroblast
2
frontal cortex
2
gamma-delta T cell
2
globus pallidus
2
glomerular endothelial cell
2
glomerular visceral epithelial cell
2
hepatic stellate cell
2
kidney glomerular epithelial cell
2
kidney tubule cell
2
leukocyte
2
mature natural killer cell
2
medulla oblongata
2
memory T cell
2
memory regulatory T cell
2
midbrain
2
muscle of leg
2
naive regulatory T cell
2
occipital lobe
2
omental fat pad
2
pancreatic polypeptide-secreting cell
2
plasmacytoid dendritic cell
2
pons
2
putamen
2
renal cortical epithelial cell
2
renal pelvis
2
skeletal muscle fiber
2
skeletal muscle myoblast
2
skeletal muscle satellite cell
2
skin fibroblast
2
spleen
2
subcutaneous adipose tissue
2
superior temporal gyrus
2
type I muscle cell
2
type II muscle cell
1
hindlimb muscle
1
B-Lymphocytes
1
B-lymphocyte
1
CD1c-positive myeloid dendritic cell
1
CD4-Positive T-Lymphocytes
1
Glioblastoma
1
Ishikawa
1
Peyer's patch
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
Schwann cell
1
Th1 cell
1
Th17 cell
1
Th2 cell
1
activated CD4-positive, alpha-beta T cell
1
activated CD8-positive, alpha-beta T cell
1
adrenal gland
1
aortic adventitial fibroblast
1
ascending aorta
1
astrocyte
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
basal cell
1
bipolar neuron
1
brain microvascular endothelial cell
1
brain pericyte
1
breast epithelium
1
bronchial epithelial cell
1
cardiac precursors
1
cerebellar cortex
1
cerebellum
1
chorion membrane
1
choroid plexus epithelial cell
1
ciliated cell
1
club cell
1
conventional dendritic cell
1
cortex of kidney
1
crypt of Lieberkuhn
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
dermis microvascular lymphatic vessel endothelial cell
1
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
embryonic facial prominence
1
endothelial cell of artery
1
endothelial cell of lymphatic vessel
1
epithelial cell of proximal tubule
1
erythrocyte
1
esophagus muscularis mucosa
1
esophagus squamous epithelium
1
excitatory neuron
1
eye
1
fetal heart
1
fibroblast of mammary gland
1
fibroblast of peridontal ligament
1
fibroblast of pulmonary artery
1
fibroblast of villous mesenchyme
1
forelimb muscle
1
foreskin fibroblast
1
foreskin keratinocyte
1
foreskin melanocyte
1
gabaergic neuron
1
gastrocnemius medialis
1
glial cell
1
glomerular epithelium
1
heart right ventricle
1
hematopoietic multipotent progenitor cell
1
hippocampal neuron
1
iPS DF 4.7 Cell Line
1
immature natural killer cell
1
inferior parietal cortex
1
iris pigment epithelial cell
1
kidney capillary endothelial cell
1
kidney distal convoluted tubule epithelial cell
1
kidney epithelial cell
1
kidney interstitial cell
1
kidney loop of Henle epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
large intestine
1
left cardiac atrium
1
left renal cortex interstitium
1
left renal pelvis
1
limb
1
lower motor neuron
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
mammary epithelial cell
1
mammary gland epithelial cell
1
megakaryocyte
1
mesendoderm
1
microglial cell/astrocyte
1
middle frontal gyrus
1
muscle of arm
1
myeloid dendritic cell
1
myofibroblast cell
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
natural killer cell mediated cytotoxicity
Organ
6
epithelium
2
limb
2
musculature of body
Life stage
2
adult
1
fetal
1
unknown
Date released
2
February, 2024
2
May, 2022
1
August, 2021
1
January, 2020
1
January, 2021
1
June, 2020
Software used
8
macs
Lab
3
AMP-T2D consortium
2
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
1
Katalin Susztak, Upenn
1
Stephen Parker, UMich
Project
7
AMP
1
T1D
RFA
ENCODE3
4
AMP
3
AMP2
1
T1D
award.rfa!
ENCODE3
biosample_type!
cell line
Showing 8 of 8 results
table-tab-icon
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Download
FileSet
DSR369PUU
released
Annotation file set
: accessible chromatin annotation from scATAC-seq of Endothelial
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR897TMQ
released
Annotation file set
: Accessible chromatin from snATAC-seq of endothelial cell from human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR426RPD
released
Annotation file set
: Accessible chromatin annotation of Endothelial cells from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR493PXL
released
Annotation file set
: Accessible chromatin from Katalin Susztak 75kidney Project of Endothelial cells
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR264NGG
released
Annotation file set
: Cell type chromatin broad peaks and bw of endothelial cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR466IWS
released
Annotation file set
: Accessible chromatin annotation for Muscle Fetal muscle from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579LZJ
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of endothelial
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR357EDZ
released
Annotation file set
: Accessible chromatin annotation of skeletal muscle leg from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP