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Schema
Citing CMDGA
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Annotation type
3
accessible chromatin
3
differential activity
3
gene expression
1
target gene predictions
1
variant allelic effects
Annotation Category
3
cis-regulatory elements
Annotation type Category
2
snATAC-seq
1
ATAC-seq
Available data
3
bed bed3+
2
bigWig
1
bam
1
bed gappedPeak
1
bigBed narrowPeak
1
xls
File set status
3
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
3
primary cell
Biosample term
4
pancreatic beta cell
3
pancreatic alpha cell
3
pancreatic ductal cell
2
aortic endothelial cell
2
endothelial cell of umbilical vein
2
glomerular endothelial cell
2
hepatocyte
2
kidney glomerular epithelial cell
2
kidney tubule cell
2
pancreatic acinar cell
2
pancreatic delta cell
2
renal cortical epithelial cell
2
retinal pigment epithelial cell
1
brain microvascular endothelial cell
1
bronchial epithelial cell
1
choroid plexus epithelial cell
1
endothelial cell
1
epithelial cell of proximal tubule
1
glomerular visceral epithelial cell
1
iris pigment epithelial cell
1
kidney capillary endothelial cell
1
kidney epithelial cell
1
mammary epithelial cell
1
non-pigmented ciliary epithelial cell
1
pancreatic endothelial cell
1
pancreatic polypeptide-secreting cell
1
pulmonary artery endothelial cell
1
tracheal epithelial cell
Organ
3
epithelium
3
pancreas
Life stage
2
adult
1
unknown
Date released
1
February, 2024
1
October, 2019
1
September, 2022
Software used
3
macs
Lab
2
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Project
3
AMP
RFA
3
AMP
2
ENCODE3
2
T1D
biosample_term_name!
basal cell of epidermis
Showing 3 of 3 results
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Download
FileSet
DSR938VDA
released
Annotation file set
: Accessible chromatin from snATAC-seq of alpha cells from human pancreatic islet samples
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR110ITH
released
Annotation file set
: Pancreatic alpha cell accessible chromatin annotation of overlapping ATAC-seq sites from 5 samples with most significant peak selected
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR593VJK
released
Annotation file set
: pancreatic alpha cell accessible chromatin annotation from snATAC
Lab:
Kyle Gaulton, UCSD
Project:
AMP