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Schema
Citing CMDGA
Clear Filters
Annotation type
7
accessible chromatin
5
gene expression
4
candidate regulatory elements
Annotation Category
7
cis-regulatory elements
Annotation type Category
5
ATAC-seq
2
snATAC-seq
Available data
7
bed bed3+
5
bigWig
File set status
7
released
Genome assembly (visualization)
7
GRCh38
7
hg19
Organism
7
Homo sapiens
Biosample type
7
primary cell
Biosample term
7
kidney
5
hepatocyte
4
endothelial cell of hepatic sinusoid
3
endothelial cell
2
fibroblast
2
skeletal muscle fiber
2
smooth muscle cell
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
T cell
1
adipocyte
1
embryonic stem cell
1
glial cell
1
glomerular visceral epithelial cell
1
kidney distal convoluted tubule epithelial cell
1
kidney interstitial cell
1
kidney loop of Henle epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
leukocyte
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
mesenchymal stem cell
1
neural cell
1
neuron cell of Hypothalamus (neuron)
1
proximal tubule cells with injury markers
1
renal intercalated cell
1
renal principal cell
1
skeletal muscle satellite cell
1
type I muscle cell
1
type II muscle cell
Organ
5
epithelium
5
liver
2
connective tissue
Life stage
7
adult
Date released
5
February, 2024
2
May, 2022
Software used
7
macs
Lab
5
Ines Cebola, Imperial College London
2
Bing Ren, UCSD
Project
7
AMP
RFA
15
ENCODE3
7
AMP2
2
AMP
biosample_term_name!
pancreatic alpha cell
Showing 7 of 7 results
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FileSet
DSR548JZG
released
Annotation file set
: Accessible chromatin annotation of Fibroblast(sub-type 2) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR988BGT
released
Annotation file set
: Accessible chromatin annotation of Fibroblast(sub-type 1) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR614AYG
released
Annotation file set
: Accessible chromatin of primary hepatocytes in basal media with 10nM insulin, 320µM palmitic acid and 320µM oleic acid (18 hours). Monolayer culture, day 3.
Lab:
Ines Cebola, Imperial College London
Project:
AMP
FileSet
DSR961YSK
released
Annotation file set
: Accessible chromatin of primary hepatocytes in basal media with 10nM insulin and 320µM oleic acid (18 hours). Monolayer culture, day 3.
Lab:
Ines Cebola, Imperial College London
Project:
AMP
FileSet
DSR909IMA
released
Annotation file set
: Accessible chromatin of primary hepatocytes in basal media with 10nM insulin and 320µM palmitic acid (18 hours). Monolayer culture, day 3.
Lab:
Ines Cebola, Imperial College London
Project:
AMP
FileSet
DSR862SUJ
released
Annotation file set
: Accessible chromatin of primary hepatocytes in basal media with 10nM insulin (18 hours). Monolayer culture, day 3.
Lab:
Ines Cebola, Imperial College London
Project:
AMP
FileSet
DSR683ANQ
released
Annotation file set
: Accessible chromatin of primary hepatocytes in basal media with 0.1nM insulin (18 hours). Monolayer culture, day 3.
Lab:
Ines Cebola, Imperial College London
Project:
AMP