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Citing CMDGA
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Annotation type
238
gene expression
161
differential activity
6
eQTL
5
accessible chromatin
1
other
1
pQTL
Annotation Category
5
cis-regulatory elements
Annotation type Category
3
ATAC-seq
2
snATAC-seq
Available data
bed bed3+
315
bigWig
9
bigBed narrowPeak
File set status
5
released
Genome assembly (visualization)
2
hg19
Organism
5
Homo sapiens
Biosample type
3
in vitro differentiated cells
2
primary cell
Biosample term
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
pancreatic acinar cell
1
pancreatic ductal cell
Organ
2
epithelium
2
pancreas
Life stage
2
adult
Date released
3
November, 2022
2
February, 2024
Software used
5
macs
Lab
AMP-T2D consortium
3
Struan F.A. Grant, CHOP
2
Kyle Gaulton, UCSD
Project
5
AMP
RFA
3
AMP2
2
AMP
biosample_term_name!
bone marrow cell
files.file_type!
bed bed3+
lab.title!
AMP-T2D consortium
month_released!
August, 2020
Showing 5 of 5 results
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FileSet
DSR593BUS
released
Annotation file set
: Accessible chromatin of an established embryonic stem cell derived hypothalamic-like neuron model across three stages of in vitro differentiation (Hypothalamic Neuron).
Lab:
Struan F.A. Grant, CHOP
Project:
AMP
FileSet
DSR817DDX
released
Annotation file set
: Accessible chromatin of an established embryonic stem cell derived hypothalamic-like neuron model across three stages of in vitro differentiation (Hypothalamic Progenitor).
Lab:
Struan F.A. Grant, CHOP
Project:
AMP
FileSet
DSR455VRI
released
Annotation file set
: Accessible chromatin of an established embryonic stem cell derived hypothalamic-like neuron model across three stages of in vitro differentiation (Embryonic Stem Cell).
Lab:
Struan F.A. Grant, CHOP
Project:
AMP
FileSet
DSR553FGJ
released
Annotation file set
: pancreatic ductal cell accessible chromatin annotation from snATAC
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR294OTS
released
Annotation file set
: pancreatic acinar cell accessible chromatin annotation from snATAC
Lab:
Kyle Gaulton, UCSD
Project:
AMP